00001 #ifndef DEF_UTIL_H
00002 #define DEF_UTIL_H
00003
00004 #include "blastParser.h"
00005 #include "blatParser.h"
00006
00007 typedef struct {
00008 char* transcriptName;
00009 char* swissProt;
00010 char* uniprotId;
00011 char* geneSymbol;
00012 char* refseqId;
00013 char* refseqDescription;
00014 } KgXref;
00015
00016
00017
00018 typedef struct {
00019 char* transcriptName;
00020 char* treeFamId;
00021 } KgTreeFam;
00022
00023
00024 extern int getNucleotideOverlap ( BlatQuery* blQ );
00025 extern Array util_readKnownGeneXrefs (char* fileName);
00026 extern Array util_readKnownGeneTreeFams (char* fileName);
00027 extern int sortKgXrefsByTranscriptName (KgXref *a, KgXref *b);
00028 extern void transcript2geneSymbolAndGeneDescription (Array kgXrefs, char *transcriptName, char** geneSymbol, char **description);
00029
00030
00031 #endif
