00001 #include "log.h"
00002 #include "format.h"
00003 #include "gfr.h"
00004
00005
00006
00007 int main (int argc, char *argv[])
00008 {
00009 GfrEntry *currGE;
00010 int count;
00011 int countRemoved;
00012
00013 if (argc != 2) {
00014 usage ("%s <string>",argv[0]);
00015 }
00016 count = 0;
00017 countRemoved = 0;
00018 gfr_init ("-");
00019 puts (gfr_writeHeader ());
00020 while (currGE = gfr_nextEntry ()){
00021 if (currGE->descriptionTranscript1 == NULL ||
00022 currGE->descriptionTranscript2 == NULL) {
00023 die ("Transcript description is missing");
00024 }
00025 if (strCaseStr (currGE->descriptionTranscript1,argv[1]) ||
00026 strCaseStr (currGE->descriptionTranscript2,argv[1])) {
00027 countRemoved++;
00028 continue;
00029 }
00030 puts (gfr_writeGfrEntry (currGE));
00031 count++;
00032 }
00033 gfr_deInit ();
00034 warn ("%s_string: %s",argv[0],argv[1]);
00035 warn ("%s_numRemoved: %d",argv[0],countRemoved);
00036 warn ("%s_numGfrEntries: %d",argv[0],count);
00037 return 0;
00038 }
00039
