An integrative ENCODE resource for cancer: interpreting non-coding mutations and gene regulation
Supplementary Data
EN-CODEC.SUMMARY
Summary of EN-CODEC experiments
EN-CODEC.CASPER
CASPER enhancer calls, SVM filtered
| GM12878 SVM-filtered |
| HepG2 SVM-filtered |
| K562 SVM-filtered |
| MCF-7 SVM-filtered |
EN-CODEC.ESCAPE
ESCAPE enhancer peak calls
| GM12878 peak calls |
| K562 peak calls |
EN-CODEC.ENHANCER
CASPERxESCAPE intersection, with accession to the Encyclopedia cRE
| GM12878 CASPERxESCAPE merged calls |
| K562 CASPERxESCAPE merged calls |
EN-CODEC.JEME
JEME enhancer target predictions
| GM12878 enhancer target filtered |
| HepG2 enhancer target filtered |
| K562 enhancer target filtered |
| MCF-7 enhancer target filtered |
EN-CODEC.ENHANCER-TARGET
Integrative enhancer annotations
EN-CODEC.TIP
Promoters using TIP
| Proximal regulatory region TIP profiles |
EN-CODEC.NETWORK.regNet
Regulatory network
EN-CODEC.NETWORK.mergeNet
Merged network
| Proximal TSS-based merged network |
| Proximal TIP-based merged network |