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Packages that use RateModel | |
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org.gersteinlab.regulation | |
org.gersteinlab.regulation.model |
Uses of RateModel in org.gersteinlab.regulation |
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Method parameters in org.gersteinlab.regulation with type arguments of type RateModel | |
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double |
TrajectoryProfile.getResidual(int j,
int[][] ks,
java.lang.Class<? extends RateModel> modelClass,
double[] a0)
Get the residual when using some genes k to predict the expression of a gene j based on the best fit of a rate model starting from an initial set of parameter values. |
double |
TrajectoryProfile.getResidual(int j,
int[][] ks,
java.lang.Class<? extends RateModel> modelClass,
double[] aStar,
int iter,
double[] mins,
double[] maxs)
Get the residual when using some genes k to predict the expression of a gene j based on the best fit of a rate model starting from random parameter values. |
Uses of RateModel in org.gersteinlab.regulation.model |
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Subclasses of RateModel in org.gersteinlab.regulation.model | |
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class |
LinearRateModel
Providing methods for a rate model based on linear differential equations. |
class |
MultiplicativeRateModel
Providing methods for a rate model based on multiplicative differential equations. |
class |
SigmoidalRateModel
Providing methods for a rate model based on sigmoidal differential equations. |
Constructor parameters in org.gersteinlab.regulation.model with type arguments of type RateModel | |
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RateModelSqrDiff(double[] tIn,
double[][] yjIn,
double[][][][] yksIn,
double[][][][] dykdtsIn,
java.lang.Class<? extends RateModel> modelClass)
Create the function with the given set of points and target values and differentials. |
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