Uses of Class
org.gersteinlab.regulation.model.RateModel

Packages that use RateModel
org.gersteinlab.regulation   
org.gersteinlab.regulation.model   
 

Uses of RateModel in org.gersteinlab.regulation
 

Method parameters in org.gersteinlab.regulation with type arguments of type RateModel
 double TrajectoryProfile.getResidual(int j, int[][] ks, java.lang.Class<? extends RateModel> modelClass, double[] a0)
          Get the residual when using some genes k to predict the expression of a gene j based on the best fit of a rate model starting from an initial set of parameter values.
 double TrajectoryProfile.getResidual(int j, int[][] ks, java.lang.Class<? extends RateModel> modelClass, double[] aStar, int iter, double[] mins, double[] maxs)
          Get the residual when using some genes k to predict the expression of a gene j based on the best fit of a rate model starting from random parameter values.
 

Uses of RateModel in org.gersteinlab.regulation.model
 

Subclasses of RateModel in org.gersteinlab.regulation.model
 class LinearRateModel
           Providing methods for a rate model based on linear differential equations.
 class MultiplicativeRateModel
           Providing methods for a rate model based on multiplicative differential equations.
 class SigmoidalRateModel
           Providing methods for a rate model based on sigmoidal differential equations.
 

Constructor parameters in org.gersteinlab.regulation.model with type arguments of type RateModel
RateModelSqrDiff(double[] tIn, double[][] yjIn, double[][][][] yksIn, double[][][][] dykdtsIn, java.lang.Class<? extends RateModel> modelClass)
          Create the function with the given set of points and target values and differentials.