org.gersteinlab.regulation
Class Main
java.lang.Object
org.gersteinlab.regulation.Main
public class Main
- extends java.lang.Object
The main predictor class.
- Version:
- 1.0 (August 20, 2008)
Change History:
1.0 - Initial version
- Author:
- Kevin Yuk-Lap Yip
Constructor Summary |
Main()
|
Method Summary |
static void |
main(java.lang.String[] argv)
|
protected static void |
predictIntersection(double[][][] r,
java.util.List<java.lang.String> predictions,
int[][] predicted,
int batch,
boolean signedPred)
Make predictions from the intersection of multiple models. |
protected static void |
predictUnion(double[][][] r,
java.util.List<java.lang.String> predictions,
int[][] predicted,
int batch,
boolean signedPred)
Make predictions from the union of multiple models. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
TEAM_NAME
public static final java.lang.String TEAM_NAME
- See Also:
- Constant Field Values
SEARCH_ITER
protected static final int SEARCH_ITER
- See Also:
- Constant Field Values
Main
public Main()
main
public static void main(java.lang.String[] argv)
predictIntersection
protected static void predictIntersection(double[][][] r,
java.util.List<java.lang.String> predictions,
int[][] predicted,
int batch,
boolean signedPred)
- Make predictions from the intersection of multiple models.
- Parameters:
r
- The residuals from the models
First dimension: model
Second dimension: target gene
Third dimension: potential regulatorpredictions
- The current list of predictionspredicted
- Whether a regulation has been predicted
First dimension: regulator
Second dimension: targetbatch
- The batch numbersignedPred
- Whether the predictions are signed
predictUnion
protected static void predictUnion(double[][][] r,
java.util.List<java.lang.String> predictions,
int[][] predicted,
int batch,
boolean signedPred)
- Make predictions from the union of multiple models.
- Parameters:
r
- The residuals from the models
First dimension: model
Second dimension: target gene
Third dimension: potential regulatorpredictions
- The current list of predictionspredicted
- Whether a regulation has been predicted
First dimension: regulator
Second dimension: targetbatch
- The batch numbersignedPred
- Whether the predictions are signed