Raw Data for the "Comparative Analysis of the Transcriptome across Distant Species"

The names and descriptions of all the datasets are listed in the supplementary file :

http://cmptxn.gersteinlab.org/Comparative_Datasets.xlsx

Below for each organism, we hyperlink to the actual raw data at the project DCC and at SRA/GEO.

Fly

Fly Data for the Comparative ENCODE RNA resource

Biological ID	SRA Sample Accession	SRR Run Accession	modENCODE DCC ID	New Data or Published (PMID)
501	SRS280984	SRR384918	modENCODE_5268	New
502	SRS281024	SRR384958	modENCODE_5268	New
550	SRS281003	SRR384937	modENCODE_5269	New
551	SRS281004	SRR384938	modENCODE_5269	New
520	SRS280988	SRR384922	modENCODE_5270	New
521	SRS280989	SRR384923	modENCODE_5270	New
531	SRS280994	SRR384928	modENCODE_5271	New
532	SRS281028	SRR384962	modENCODE_5271	New
505	SRS280985	SRR384919	modENCODE_5272	New
506	SRS281025	SRR384959	modENCODE_5272	New
553	SRS280971	SRR384905	modENCODE_5273	New
554	SRS281005	SRR384939	modENCODE_5273	New
538	SRS280973	SRR384907	modENCODE_5274	New
539	SRS280997	SRR384931	modENCODE_5274	New
523	SRS280990	SRR384924	modENCODE_5275	New
524	SRS280991	SRR384925	modENCODE_5275	New
535	SRS280995	SRR384929	modENCODE_5276	New
536	SRS280996	SRR384930	modENCODE_5276	New
513	SRS280975	SRR384909	modENCODE_5277	New
512	SRS280987	SRR384921	modENCODE_5277	New
509	SRS280972	SRR384906	modENCODE_5278	New
510	SRS280986	SRR384920	modENCODE_5278	New
560	SRS280976	SRR384910	modENCODE_5279	New
559	SRS281008	SRR384942	modENCODE_5279	New
556	SRS281006	SRR384940	modENCODE_5280	New
557	SRS281007	SRR384941	modENCODE_5280	New
545	SRS280974	SRR384908	modENCODE_5281	New
544	SRS281000	SRR384934	modENCODE_5281	New
541	SRS280998	SRR384932	modENCODE_5282	New
542	SRS280999	SRR384933	modENCODE_5282	New
586	SRS281021	SRR384955	modENCODE_5283	New
587	SRS281022	SRR384956	modENCODE_5283	New
578	SRS280979	SRR384913	modENCODE_5284	New
577	SRS281017	SRR384951	modENCODE_5284	New
574	SRS281015	SRR384949	modENCODE_5285	New
575	SRS281016	SRR384950	modENCODE_5285	New
572	SRS280978	SRR384912	modENCODE_5286	New
571	SRS281014	SRR384948	modENCODE_5286	New
563	SRS281009	SRR384943	modENCODE_5287	New
564	SRS281010	SRR384944	modENCODE_5287	New
567	SRS280977	SRR384911	modENCODE_5288	New
566	SRS281011	SRR384945	modENCODE_5288	New
568	SRS281012	SRR384946	modENCODE_5289	New
569	SRS281013	SRR384947	modENCODE_5289	New
497	SRS280983	SRR384917	modENCODE_5290	New
498	SRS281026	SRR384960	modENCODE_5290	New
547	SRS281001	SRR384935	modENCODE_5291	New
548	SRS281002	SRR384936	modENCODE_5291	New
515	SRS280982	SRR384916	modENCODE_5292	New
516	SRS281027	SRR384961	modENCODE_5292	New
527	SRS280992	SRR384926	modENCODE_5293	New
528	SRS280993	SRR384927	modENCODE_5293	New
584	SRS280980	SRR384914	modENCODE_5295	New
583	SRS281020	SRR384954	modENCODE_5295	New
580	SRS281018	SRR384952	modENCODE_5296	New
581	SRS281019	SRR384953	modENCODE_5296	New
590	SRS280981	SRR384915	modENCODE_5294	New
589	SRS281023	SRR384957	modENCODE_5294	New
BS493	SRR103726	SRR103726	modENCODE_4270	New
BS494	SRR103727	SRR103727	modENCODE_4270	New
BS497	SRR103730	SRR103730	modENCODE_4271	New
BS498	SRR103731	SRR103731	modENCODE_4271	New
BS495	SRR103728	SRR103728	modENCODE_4272	New
BS496	SRR103729	SRR103729	modENCODE_4272	New
BS499	SRR103732	SRR103732	modENCODE_4273	New
BS500	SRR103733	SRR103733	modENCODE_4273	New
BS483	SRR103746	SRR103746	modENCODE_4274	New
BS484	SRR124258	SRR124258	modENCODE_4274	New
BS441	SRR103747	SRR103747	modENCODE_4275	New
BS442	SRR103748	SRR103748	modENCODE_4275	New
BS491	SRR124260	SRR124260	modENCODE_4276	New
BS492	SRR103725	SRR103725	modENCODE_4276	New
BS503	SRR103736	SRR103736	modENCODE_4277	New
BS504	SRR103737	SRR103737	modENCODE_4277	New
BS427	SRR103738	SRR103738	modENCODE_4278	New
BS428	SRR103739	SRR103739	modENCODE_4278	New
BS425	SRR103744	SRR103744	modENCODE_4279	New
BS426	SRR103745	SRR103745	modENCODE_4279	New
BS413	SRR103708	SRR103708	modENCODE_4280	New
BS414	SRR103709	SRR103709	modENCODE_4280	New
BS417	SRR103710	SRR103710	modENCODE_4281	New
BS418	SRR103711	SRR103711	modENCODE_4281	New
BS431	SRR103712	SRR103712	modENCODE_4282	New
BS432	SRR103713	SRR103713	modENCODE_4282	New
BS429	SRR103740	SRR103740	modENCODE_4283	New
BS430	SRR103741	SRR103741	modENCODE_4283	New
BS489	SRR103723	SRR103723	modENCODE_4284	New
BS490	SRR103724	SRR103724	modENCODE_4284	New
BS238	SRR070434	SRR070434	modENCODE_4241	New
BS239	SRR100279	SRR100279	modENCODE_4241	New
BS287	SRR116383	SRR116383	modENCODE_4242	New
BS288	SRR070420	SRR070420	modENCODE_4242	New
BS257	SRR070414	SRR070414	modENCODE_4243	New
BS258	SRR070415	SRR070415	modENCODE_4243	New
BS268	SRR070431	SRR070431	modENCODE_4244	New
BS269	SRR100283	SRR100283	modENCODE_4244	New
BS242	SRR070432	SRR070432	modENCODE_4245	New
BS243	SRR100280	SRR100280	modENCODE_4245	New
BS290	SRR070421	SRR070421	modENCODE_4246	New
BS291	SRR070424	SRR070424	modENCODE_4246	New
BS275	SRR070397	SRR070397	modENCODE_4247	New
BS276	SRR070418	SRR070418	modENCODE_4247	New
BS260	SRR070416	SRR070416	modENCODE_4248	New
BS261	SRR070400	SRR070400	modENCODE_4248	New
BS272	SRR070422	SRR070422	modENCODE_4249	New
BS273	SRR070423	SRR070423	modENCODE_4249	New
BS249	SRR070395	SRR070395	modENCODE_3446, modENCODE_4250	New
BS250	SRR070399	SRR070399	modENCODE_3446, modENCODE_4250	New
BS246	SRR070394	SRR070394	modENCODE_3445, modENCODE_4251	New
BS247	SRR070398	SRR070398	modENCODE_3445, modENCODE_4251	New
BS296	SRR070391	SRR070391	modENCODE_4252	New
BS297	SRR070404	SRR070404	modENCODE_4252	New
BS293	SRR070403	SRR070403	modENCODE_4253	New
BS294	SRR070390	SRR070390	modENCODE_4253	New
BS281	SRR070387	SRR070387	modENCODE_4254	New
BS282	SRR070402	SRR070402	modENCODE_4254	New
BS278	SRR070401	SRR070401	modENCODE_4255	New
BS279	SRR070386	SRR070386	modENCODE_4255	New
BS487	SRR103721	SRR103721	modENCODE_4285	New
BS488	SRR103722	SRR103722	modENCODE_4285	New
BS455	SRR124259	SRR124259	modENCODE_4286	New
BS456	SRR103718	SRR103718	modENCODE_4286	New
BS323	SRR100271	SRR100271	modENCODE_4256	New
BS324	SRR070412	SRR070412	modENCODE_4256	New
BS465	SRR103719	SRR103719	modENCODE_4287	New
BS466	SRR103720	SRR103720	modENCODE_4287	New
BS501	SRR103734	SRR103734	modENCODE_4288	New
BS502	SRR103735	SRR103735	modENCODE_4288	New
BS314	SRR070409	SRR070409	modENCODE_4257	New
BS315	SRR070410	SRR070410	modENCODE_4257	New
BS311	SRR100269	SRR100269	modENCODE_4258	New
BS312	SRR070426	SRR070426	modENCODE_4258	New
BS308	SRR100268	SRR100268	modENCODE_4259	New
BS309	SRR070408	SRR070408	modENCODE_4259	New
BS300	SRR070405	SRR070405	modENCODE_4260	New
BS301	SRR070406	SRR070406	modENCODE_4260	New
BS303	SRR070392	SRR070392	modENCODE_4261	New
BS304	SRR070393	SRR070393	modENCODE_4261	New
BS305	SRR070425	SRR070425	modENCODE_4262	New
BS306	SRR070407	SRR070407	modENCODE_4262	New
BS234	SRR070436	SRR070436	modENCODE_4263	New
BS235	SRR100281	SRR100281	modENCODE_4263	New
BS284	SRR070388	SRR070388	modENCODE_4264	New
BS285	SRR070419	SRR070419	modENCODE_4264	New
BS252	SRR070430	SRR070430	modENCODE_4265	New
BS253	SRR100282	SRR100282	modENCODE_4265	New
BS264	SRR070396	SRR070396	modENCODE_4266	New
BS265	SRR070417	SRR070417	modENCODE_4266	New
BS320	SRR070411	SRR070411	modENCODE_4268	New
BS321	SRR070428	SRR070428	modENCODE_4268	New
BS317	SRR070427	SRR070427	modENCODE_4269	New
BS318	SRR100270	SRR100270	modENCODE_4269	New
BS326	SRR070429	SRR070429	modENCODE_4267	New
BS327	SRR070413	SRR070413	modENCODE_4267	New
BS433	SRR103742	SRR103742	modENCODE_4289	New
BS434	SRR103743	SRR103743	modENCODE_4289	New
BS435	SRR103714	SRR103714	modENCODE_4290	New
BS436	SRR103715	SRR103715	modENCODE_4290	New
BS153	SRS004689	SRR023595, SRR023662, SRR023680, SRR023702, SRR023737, SRR023828, SRR024220, SRR035393, SRR767621	modENCODE_4433	New
BS165	SRS004692	SRR023548, SRR023598, SRR023674, SRR023675, SRR023681, SRR023693, SRR023712, SRR023757, SRR029232, SRR029236	modENCODE_4434	21179090
BS159	SRS004693	SRR023547, SRR023607, SRR023645, SRR023651, SRR023652, SRR023717, SRR023730, SRR023753, SRR029230, SRR029234	modENCODE_4435	21179090
BS150	SRS004695	SRR023543, SRR023648, SRR023664, SRR023678, SRR023741, SRR023825, SRR035394, SRR767619	modENCODE_4436	New
BS162	SRS004697	SRR023601, SRR023650, SRR023698, SRR023714, SRR023752, SRR023823, SRR024218, SRR035395	modENCODE_4437	21179090
BS156	SRS004696	SRR023550, SRR023605, SRR023606, SRR023642, SRR023655, SRR023658, SRR023672, SRR023679, SRR023709, SRR023710, SRR023713, SRR029176, SRR029231, SRR029233, SRR029235, SRR767607	modENCODE_4438	New
BS40	SRS004668	SRR023199, SRR023659, SRR023663, SRR023671, SRR023747, SRR023755, SRR024013, SRR027110, SRR035417, SRR035418, SRR488290, SRR488297, SRR767606	ModENCODE_4439	21179090
BS55	SRS004673	SRR023604, SRR023644, SRR023694, SRR023727, SRR023831, SRR024010, SRR024221, SRR035396, SRR035397, SRR767616	ModENCODE_4440	21179090
BS58	SRS004674	SRR023602, SRR023643, SRR023703, SRR023724, SRR023832, SRR024012, SRR035221, SRR035398, SRR035399, SRR070438, SRR488302, SRR767613	ModENCODE_4441	21179090
BS62	SRS004675	SRR023540, SRR023641, SRR023725, SRR023734, SRR023736, SRR023822, SRR024011, SRR035400, SRR035401, SRR767618	ModENCODE_4442	21179090
BS66	SRS004676	SRR023600, SRR023707, SRR023715, SRR023720, SRR023751, SRR023826, SRR035402, SRR488303, SRR767605	ModENCODE_4443	21179090
BS67	SRS004677	SRR023503, SRR023599, SRR023673, SRR023682, SRR023686, SRR023699, SRR023700, SRR024215, SRR027114, SRR035222, SRR035403, SRR767622	ModENCODE_4444	21179090
BS43	SRS004669	SRR023502, SRR023660, SRR023705, SRR023722, SRR023745, SRR027112, SRR488291, SRR488298, SRR767626	ModENCODE_4447	21179090
BS71	SRS004678	SRR023506, SRR023665, SRR023684, SRR023718, SRR023728, SRR027109, SRR488304, SRR767620	ModENCODE_4445	21179090
BS73	SRS004679	SRR023538, SRR023685, SRR023711, SRR023733, SRR023834, SRR024015, SRR035404, SRR767625	ModENCODE_4446	21179090
BS46	SRS004670	SRR023539, SRR023669, SRR023696, SRR023746, SRR023836, SRR024014, SRR035220, SRR035405, SRR035406, SRR488292, SRR767609	ModENCODE_4448	21179090
BS49	SRS004671	SRR023504, SRR023654, SRR023668, SRR023688, SRR023691, SRR023732, SRR024009, SRR024217, SRR027113, SRR035407, SRR035408, SRR488300, SRR767610	ModENCODE_4449	21179090
BS54	SRS004672	SRR023549, SRR023596, SRR023603, SRR023657, SRR023701, SRR023749, SRR023750, SRR023754, SRR023759, SRR024219, SRR035409, SRR488301, SRR767615	ModENCODE_4450	21179090
BS107	SRS004680	SRR023597, SRR023646, SRR023661, SRR023666, SRR023706, SRR023835, SRR035410, SRR488305, SRR767624	modENCODE_4451	21179090
BS111	SRS004681	SRR023542, SRR023670, SRR023719, SRR023761, SRR023824, SRR024016, SRR035223, SRR035411, SRR035412, SRR488293, SRR767623	modENCODE_4452	New
BS113	SRS004682	SRR023507, SRR023649, SRR023677, SRR023731, SRR023760, SRR027111, SRR488306, SRR767627	modENCODE_4453	21179090
BS196	SRS004686	SRR023546, SRR023608, SRR023638, SRR023640, SRR023697, SRR023726, SRR023758, SRR035413	modENCODE_4454	21179090
BS200	SRS004687	SRR023505, SRR023676, SRR023683, SRR023690, SRR023692, SRR023742, SRR027108, SRR488294	modENCODE_4455	21179090
BS203	SRS004867	SRR023729, SRR023739, SRR023782, SRR023865, SRR026433, SRR035219, SRR035392	modENCODE_4456	21179090
BS137	SRS004869	SRR023667, SRR023721, SRR023743, SRR023785, SRR023829, SRR026431, SRR488296, SRR767614	modENCODE_4459	21179090
BS140	SRS004870	SRR023738, SRR023744, SRR023748, SRR023783, SRR024216, SRR026430, SRR035218, SRR035391, SRR767611	modENCODE_4460	21179090
BS143	SRS004703	SRR023609, SRR023653, SRR023723, SRR023735, SRR023740, SRR023827, SRR035416, SRR767612	modENCODE_4461	21179090
BS129	SRS004868	SRR023687, SRR023695, SRR023704, SRR023784, SRR023837, SRR026432, SRR035217, SRR767617	modENCODE_4462	New
BS133	SRS004701	SRR023544, SRR023639, SRR023647, SRR023689, SRR023716, SRR023833, SRR035414, SRR488295, SRR767608	modENCODE_4457	New
BS136	SRS004702	SRR023541, SRR023656, SRR023708, SRR023756, SRR023830, SRR035415, SRR767604	modENCODE_4458	New
BC1	SRX015641	SRR034220	modENCODE_4595, modENCODE_4607	New
BC6	SRX015642	SRR034221	modENCODE_4603, modENCODE_4615	New
BC7	SRX015643	SRR034222	modENCODE_4604, modENCODE_4616	New
BC8	SRX015644	SRR034223	modENCODE_4605, modENCODE_4617	New
BC9	SRX015645	SRR034224	modENCODE_4606, modENCODE_4618	New
BC10	SRX015646	SRR034225	modENCODE_4596, modENCODE_4608	New
BC2	SRX015647	SRR034226	modENCODE_4597, modENCODE_4609	New
BC11	SRX015648	SRR034227	modENCODE_4598, modENCODE_4610	New
BC12	SRX015649	SRR034228	modENCODE_4599, modENCODE_4611	New
BC3	SRX015650	SRR034229	modENCODE_4600, modENCODE_4612	New
BC4	SRX015651	SRR034230	modENCODE_4601, modENCODE_4613	New
BC5	SRX015652	SRR034231	modENCODE_4602, modENCODE_4614	New
BS153	SRX246407	SRR767621		New
BS150	SRX246405	SRR767619		New
BS156	SRX246403	SRR767607		New
BS41	SRX246413	SRR767606		New
BS56	SRX246424	SRR767616		New
BS59	SRX246415	SRR767613		New
BS61	SRX246412	SRR767618		New
BS64	SRX246418	SRR767605		New
BS68	SRX246414	SRR767622		New
BS44	SRX246401	SRR767626		New
BS70	SRX246411	SRR767620		New
BS74	SRX246402	SRR767625		New
BS47	SRX246408	SRR767609		New
BS51	SRX246422	SRR767610		New
BS52	SRX246409	SRR767615		New
BS108	SRX246410	SRR767624		New
BS111	SRX246423	SRR767623		New
BS114	SRX246406	SRR767627		New
BS138	SRX246416	SRR767614		New
BS141	SRX246419	SRR767611		New
BS144	SRX246404	SRR767612		New
BS129	SRX246421	SRR767617		New
BS133	SRX246420	SRR767608		New
BS136	SRX246417	SRR767604		New
BS22	SRS117996	SRR070272	modENCODE_4391	New
BS97	SRP000709	SRR015074, SRR015076, SRR015078, SRR015080, SRR015082	modENCODE_5955	New
BS208	SRP000709	SRR015084, SRR015086, SRR015088, SRR015090, SRR015092	modENCODE_5952	New
BS181	SRP000709	SRR015094, SRR015096, SRR015098, SRR015100, SRR015102	modENCODE_5954	New
BS12	SRP000709	SRR015104, SRR015106, SRR015108, SRR015110, SRR015112	modENCODE_5953	New
BS205	SRS118004	SRR070260, SRR070268, SRR111868	modENCODE_4393	New
BS28	SRS118001	SRR070282, SRR070288	modENCODE_4392	New
BS76	SRS118000	SRR070264, SRR070266, SRR070279, SRR124149, SRR767598, SRR767599, SRR767600, SRR767601, SRR767602, SRR767603	modENCODE_4409	New
Lai	SRS334873	SRR500469	modENCODE_5966	New
BS311	SRS117993	SRR070263, SRR070265, SRR070278	modENCODE_4394	New
BS208	SRS117992	SRR070261, SRR070269, SRR070292, SRR111873	modENCODE_4395	New
BS85	SRS118003	SRR070258, SRR111869, SRR189833	modENCODE_4396	New
BS176	SRS118006	SRR070275	modENCODE_4397	New
BS209	SRS118008	SRR070262, SRR070270, SRR111870	modENCODE_4398	New
BS1	SRS118005	SRR070284, SRR070290, SRR111874	modENCODE_4399	New
BS13	SRS117995	SRR070283, SRR070289	modENCODE_4400	New
BS7	SRS117998	SRR070285, SRR070291	modENCODE_4401	New
BS16	SRS117999	SRR070267, SRR111871	modENCODE_4402	New
BS88	SRS118011	SRR070276	modENCODE_4403	New
BS25	SRS118009	SRR070281, SRR070287, SRR111875	modENCODE_4404	New
BS183	SRS118010	SRR070273, SRR111876	modENCODE_4405	New
BS37	SRS118002	SRR070277	modENCODE_4406	New
BS101	SRS118012	SRR070274	modENCODE_4407	New
Lai	SRS334874	SRR500468	modENCODE_5965	New
Lai	SRS334875	SRR500470	modENCODE_5964	New
Perrimon1	SRX246396, SRX246397, SRX246400	SRR767602, SRR767600, SRR767603		New
Perrimon2	SRX246395, SRX246398, SRX246399	SRR767601, SRR767599, SRR767598		New
BS80	SRS117997	SRR070280, SRR070286, SRR111877	modENCODE_4408	New
BS170	SRS117994	SRR070259, SRR111872, SRR189834, SRR189835	modENCODE_4410	New
BS34	SRS118007	SRR070271	modENCODE_4411	New

Worm Data for the Comparative ENCODE RNA resource

Biological ID	SRA Sample Accession	New Data or Published (PMID)
N2_EE_50-0	SRS258165	New
N2_EE_50-30	SRS258085	New
N2_EE_50-60	SRS242229	New
N2_EE_50-90	SRS258166	New
N2_EE_50-120	SRS242382	New
N2_EE_50-150	SRS266274	New
N2_EE_50-180	SRS266269	New
N2_EE_50-210	SRS266275	New
N2_EE_50-240	SRS266270	New
N2_EE_50-300	SRS266880	New
N2_EE_50-330	SRS266265	New
N2_EE_50-360	SRS266266	New
N2_EE_50-390	SRS266267	New
N2_EE_50-420	SRS266268	New
N2_EE_50-450	SRS266277	New
N2_EE_50-480	SRS266271	New
N2_EE_50-510	SRS266278	New
N2_EE_50-540	SRS266272	New
N2_EE_50-570	SRS266261	New
N2_EE_50-600	SRS266262	New
N2_EE_50-630	SRS266263	New
N2_EE_50-660	SRS266264	New
N2_EE_50-690	SRS266273	New
N2_EE_50-720	SRS266279	New
EE	SRS003001, SRS003002	21177976
N2_EE-2	SRS151140	New
EE_N2_EE-2	SRS003001, SRS003002, SRS151140	New
N2_E2-E8_sorted	SRS311762	New
LE	SRS003003, SRS003004	21177976
N2_LE-1	SRS174136	New
LE_N2_LE-1	SRS003003, SRS174136	New
EmMalesHIM8	SRS004858	21177976
EmMalesHIM8-2	SRS151143	New
EmMalesHIM8_EmMalesHIM8-2	SRS004858, SRS151143	New
L1	SRS003005	21177976
N2_L1-1	SRS151153	New
L1_N2_L1-1	SRS003005, SRS151153	New
LIN35	SRS002999	21177976
L2	SRS001788	19181841
N2_L2-4	SRS174229	New
L2_N2_L2-4	SRS001788, SRS174229	New
L3	SRS001790	19181841
N2_L3-1	SRS150938	New
L3_N2_L3-1	SRS001790, SRS150938	New
DauerDAF2	SRS004859	21177976
DauerDAF2-2	SRS269390	New
DauerDAF2-2-1	SRS269389	New
DauerDAF2-5-1	SRS269391	New
DauerDAF2_DauerDAF2-2_DauerDAF2-2-1_DauerDAF2-5-1	SRS004859, SRS269390, SRS269389, SRS269391
DauerEntryDAF2	SRS004860	21177976
DauerEntryDAF2-1-1	SRS269109	New
DauerEntryDAF2-2	SRS174141	New
DauerEntryDAF2-4-1	SRS269110	New
DauerEntryDAF2_DauerEntryDAF2-2_DauerEntryDAF2-1-1_DauerEntryDAF2-4-1	SRS004860, SRS269109, SRS174141, SRS269110
DauerExitDAF2	SRS004861	21177976
DauerExitDAF2-2	SRS151144	New
DauerExitDAF2-3-1	SRS269108	New
DauerExitDAF2-6-1	SRS269111	New
DauerExitDAF2-2_DauerExitDAF2-3-1_DauerExitDAF2-6-1	SRS004861, SRS151144, SRS269108, SRS269111
L4	SRS001791	19181841
L4b	SRS004864	New
L4_L4b	SRS001791, SRS004864
L4MALE	SRS003000	21177976
L4MALE5	SRS174140	New
L4MALE_L4MALE5	SRS003000, SRS174140
L4JK1107soma	SRS008269	21177976
L4JK1107soma-2	SRS151145	New
L4JK1107soma_L4JK1107soma-2	SRS008269, SRS151145
YA	SRS001789	19181841
N2_Yad-1	SRS178501	New
YA_N2_Yad-1	SRS001789, SRS178501
AdultSPE9	SRS004857	21177976
N2_EE_DSN-51	SRS311763	New
N2_EE_RZ-54	SRS311907	New
N2_L2_RZ-53	SRS311908	New
N2_L2_DSN-50	SRS344178	New
N2_YA_RZ-1	SRS269392	New
DC-1-5	SRS150939	New
DC-2-12	SRS150472	New
OPDC-2-12	SRS150966	New
EF-1-24	SRS150967	New
PL-2-24	SRS150968	New
Harpo	SRS008265	21177976
HarpoEcoliCntl	SRS008266	21177976
Hsph	SRS266743	New
HsphEcoliCntl	SRS266741	New
SmacDb10	SRS008267	21177976
SmacDb10EcoliCntl	SRS008268	21177976
DSN-Negative-Positive	SRS242383, SRS242384	New
N2_4cell_EE_RZ-56	SRS311761	New
PharyngealMuscle	SRS242498	New
N2_Ad_gonad-1-RZLI	SRS344182	New
534_DMM_386/DMM386-NSML_NSMR-nrn_L1	SRS308486	New
DMM387-NSML_NSMR-nrn_L1-V	SRS311748	New
DMM383-all-nrn_L1-V	SRS311746	New
DMM391-all-nrn_L1-V	SRS311749	New
DMM383_391-all-nrn_L1-V	SRS311746, SRS311749	New
DMM401-N2all_L1-V	SRS311747	New
DMM402-N2all_L1-V	SRS311750	New
DMM401_402-N2all_L1-V	SRS311747, SRS311750	New
DMM401_N2all_L1-DSN	SRS311684	New
DMM402_N2all_L1-DSN	SRS311687	New
DMM408_Amot_nrn_L2-DSN	SRS311688	New
DMM414_Amot_nrn_L2-DSN	SRS311689	New
DMM415_Amot_nrn_L2-DSN	SRS311690	New
DMM408_414_415_Amot_nrn_L2-DSN	SRS311688, SRS311689, SRS311690	New
DMM239_Z1Z4_Em	SRS344160	New
DMM260_N2ref_EE	SRS344159	New
DMM389_NSM_L1	SRS344181	New
N2_L4cap4	SRS178993	New
N2_L4RRcap3	SRS178994	New
N2_LE-2cap6	SRS178995	New
L1LIN35-1cap1	SRS179275	New
L4MALE6cap2	SRS179276	New
N2_Yad-1RR	SRS269393	New
N2_EE-2cap5	SRS151142	New
PB2801_EE-1	SRS266838	New
PB2801_L4-1	SRS266839	New
PB2801_YAF-1	SRS266840	New
PB2801_YAM-1	SRS266841	New
AF16_EE-2	SRS255459	New
AF16_EE-3	SRS266343	New
AF16_L2-1	SRS183249	New
AF16_L2-2	SRS266344	New
AF16_L4-1	SRS183251	New
AF16_L4-2	SRS266345	New
AF16_YA-1	SRS255509	New
AF16_YA-2	SRS266342	New
AF16_Mx-1	SRS183310	New
DF5081_EE-1	SRS266350	New
DF5081_L2-1	SRS266346	New
DF5081_L4-1	SRS266347	New
DF5081_AD-F-1	SRS266349	New
DF5081_AD-M-1	SRS266348	New
SB146_EE-2	SRS267689	New
SB146_L2-1	SRS183252	New
SB146_L2-5	SRS267690	New
SB146_L4-1	SRS183253	New
SB146_YAF-1	SRS267691	New
SB146_YAM-1	SRS267692	New

Human Data for the Comparative ENCODE RNA resource

GEO Sample Accession	Library ID	New Data or Published (PMID)
GSM767854	LID9005	22955616
GSM767854	LID9006	22955616
GSM758564	LID8963	22955616
GSM758564	LID8964	22955616
GSM981246	LID45897	22955616
GSM981246	LID45898	22955616
GSM981247	LID45899	22955616
GSM981247	LID45900	22955616
GSM765396	LID9001	22955616
GSM765396	LID9002	22955616
GSM758561	LID8965	22955616
GSM758561	LID8966	22955616
GSM767855	LID9007	22955616
GSM767855	LID9008	22955616
GSM758562	LID8969	22955616
GSM758562	LID8970	22955616
GSM981254	LID44659	New
GSM981254	LID44660	New
GSM981256	LID44498	New
GSM981256	LID44499	New
GSM981257	LID45901	New
GSM758572	LID8661	22955616
GSM758572	LID8662	22955616
GSM758559	LID16629	22955616
GSM758559	LID16630	22955616
GSM767852	LID18547	22955616
GSM767852	LID18548	22955616
GSM758560	LID8467	22955616
GSM758560	LID8468	22955616
GSM767853	LID9197	22955616
GSM767853	LID9198	22955616
GSM765386	LID8532	22955616
GSM765386	LID8533	22955616
GSM758573	LID8663	22955616
GSM758573	LID8664	22955616
GSM758566	LID8461	22955616
GSM758566	LID8462	22955616
GSM767842	LID18549	22955616
GSM758570	LID8536	22955616
GSM767841	LID9199	22955616
GSM758574	LID8558	22955616
GSM984614	LID47020	New
GSM984614	LID47021	New
GSM984618	LID47022	New
GSM984618	LID47023	New
GSM984611	LID47024	New
GSM984611	LID47025	New
GSM767847	LID8790	22955616
GSM767847	LID8791	22955616
GSM765402	LID16633	22955616
GSM765402	LID16634	22955616
GSM765404	LID8470	22955616
GSM765404	LID8469	22955616
GSM767838	LID18551	22955616
GSM767848	LID9200	22955616
GSM767848	LID9201	22955616
GSM765403	LID8559	22955616
GSM765403	LID8560	22955616
GSM758567	LID8792	22955616
GSM758567	LID8793	22955616
GSM758575	LID16635	22955616
GSM758575	LID16636	22955616
GSM767840	LID18552	22955616
GSM767840	LID18553	22955616
GSM758576	LID8471	22955616
GSM758576	LID8472	22955616
GSM767850	LID9202	22955616
GSM767850	LID9203	22955616
GSM758568	LID8534	22955616
GSM758568	LID8535	22955616
GSM981258	LID47094	New
GSM981258	LID47095	New
GSM765397	LID8831	New
GSM758571	LID8695	New
GSM984621	LID47096	22955616
GSM984606	LID47807	New
GSM981260	LID47097	New
GSM981260	LID47098	New
GSM984608	LID47099	New
GSM984608	LID47100	New
GSM984607	LID47299	New
GSM984607	LID47300	New
GSM984610	LID47251	New
GSM984610	LID47252	New
GSM765393	LID9188	New
GSM767843	LID18554	New
GSM984604	LID47105	New
GSM984604	LID47253	New
GSM984613	LID47260	New
GSM984613	LID47261	New
GSM765391	LID8826	22955616
GSM765391	LID8827	22955616
GSM758578	LID8710	22955616
GSM758578	LID8711	22955616
GSM767856	LID8788	22955616
GSM767856	LID8789	22955616
GSM758563	LID8463	22955616
GSM758563	LID8464	22955616
GSM767839	LID18556	22955616
GSM758569	LID8688	22955616
GSM758569	LID8689	22955616
GSM767857	LID9206	22955616
GSM767857	LID9207	22955616
GSM758565	LID8690	22955616
GSM758565	LID8691	22955616
GSM984619	LID47249	New
GSM984619	LID47250	New
GSM984620	LID47254	New
GSM984620	LID47255	New
GSM981249	LID45016	New
GSM981249	LID45017	New
GSM981243	LID45238	New
GSM981243	LID45239	New
GSM981244	LID45611	New
GSM981244	LID45612	New
GSM981248	LID45613	New
GSM981248	LID45635	New
GSM758577	LID8659	22955616
GSM758577	LID8660	22955616
GSM765405	LID16627	22955616
GSM765405	LID16628	22955616
GSM767849	LID18545	22955616
GSM767849	LID18546	22955616
GSM840137	LID8465	22955616
GSM840137	LID8466	22955616
GSM767844	LID9195	22955616
GSM767844	LID9196	22955616
GSM765387	LID8556	22955616
GSM765387	LID8557	22955616
GSM767851	LID8824	22955616
GSM767851	LID8825	22955616
GSM765388	LID8686	22955616
GSM765388	LID8687	22955616
GSM981252	LID46857	22955616
GSM981252	LID46858	22955616
GSM981245	LID46859	22955616
GSM981245	LID46860	22955616
GSM981259	LID44657	New
GSM981259	LID44658	New
GSM984609	LID44594	New
GSM984609	LID44497	New
GSM984612	LID47247	New
GSM984612	LID47248	New
GSM765398	LID8665	22955616
GSM765398	LID8666	22955616
GSM765398	LID8830	22955616
GSM765401	LID16631	22955616
GSM765401	LID16632	22955616
GSM765401	LID8694	22955616
GSM767843	LID18554	22955616
GSM765400	LID8795	22955616
GSM765400	LID8796	22955616
GSM767857	LID9206	22955616
GSM767857	LID9207	22955616
GSM758565	LID8690	22955616
GSM758565	LID8691	22955616
GSM984616	LID47256	New
GSM984616	LID47257	New
GSM984617	LID47258	New
GSM984617	LID47259	New
GSM765389	LID8828	22955616
GSM765389	LID8829	22955616
GSM765394	LID8692	22955616
GSM765394	LID8701	22955616
GSM984615	LID47245	New
GSM984615	LID47246	New
GSM981253	LID46598	New
GSM981253	LID46599	New
GSM981251	LID46594	New
GSM981251	LID46595	New
GSM981250	LID46596	New
GSM981250	LID46597	New
GSM767845	LID9003	22955616
GSM767845	LID9011	22955616
GSM765395	LID8967	22955616
GSM765395	LID8968	22955616
GSM958728	10515	22955616
GSM958728	10565	22955616
GSM958742	10516	22955616
GSM958747	2971	22955616
GSM958747	11038	22955616
GSM958748	11039	22955616
GSM958748	2970	22955616
GSM958748	2973	22955616
GSM958733	10874	22955616
GSM958733	11289	22955616
GSM958733	11288	22955616
GSM958733	11286	22955616
GSM958743	10876	22955616
GSM958735	10882	22955616
GSM958735	10881	22955616
GSM958732	10879	22955616
GSM958732	10878	22955616
GSM958744	11585	22955616
GSM958744	11584	22955616
GSM958734	10885	22955616
GSM958734	10883	22955616
GSM958729	10517	22955616
GSM958729	10567	22955616
GSM958745	11581	22955616
GSM958745	11582	22955616
GSM958736	10884	22955616
GSM958736	11586	22955616
GSM958746	11588	22955616
GSM958746	11587	22955616

Further details at the modencode.org and encodeproject.org .Go to DCC page for an alternate view of the data. Finally see, the RNA Dashboard for an alternative view of the human data.