Raw Data for the "Comparative Analysis of the Transcriptome across Distant Species"


The names and descriptions of all the datasets are listed in the supplementary file :

http://cmptxn.gersteinlab.org/Comparative_Datasets.xlsx


Below for each organism, we hyperlink to the actual raw data at the project DCC and at SRA/GEO.


Human Worm Fly

Fly Data for the Comparative ENCODE RNA resource

Biological ID SRA Sample Accession SRR Run Accession modENCODE DCC ID New Data or Published (PMID)
501 SRS280984 SRR384918 modENCODE_5268 New
502 SRS281024 SRR384958 modENCODE_5268 New
550 SRS281003 SRR384937 modENCODE_5269 New
551 SRS281004 SRR384938 modENCODE_5269 New
520 SRS280988 SRR384922 modENCODE_5270 New
521 SRS280989 SRR384923 modENCODE_5270 New
531 SRS280994 SRR384928 modENCODE_5271 New
532 SRS281028 SRR384962 modENCODE_5271 New
505 SRS280985 SRR384919 modENCODE_5272 New
506 SRS281025 SRR384959 modENCODE_5272 New
553 SRS280971 SRR384905 modENCODE_5273 New
554 SRS281005 SRR384939 modENCODE_5273 New
538 SRS280973 SRR384907 modENCODE_5274 New
539 SRS280997 SRR384931 modENCODE_5274 New
523 SRS280990 SRR384924 modENCODE_5275 New
524 SRS280991 SRR384925 modENCODE_5275 New
535 SRS280995 SRR384929 modENCODE_5276 New
536 SRS280996 SRR384930 modENCODE_5276 New
513 SRS280975 SRR384909 modENCODE_5277 New
512 SRS280987 SRR384921 modENCODE_5277 New
509 SRS280972 SRR384906 modENCODE_5278 New
510 SRS280986 SRR384920 modENCODE_5278 New
560 SRS280976 SRR384910 modENCODE_5279 New
559 SRS281008 SRR384942 modENCODE_5279 New
556 SRS281006 SRR384940 modENCODE_5280 New
557 SRS281007 SRR384941 modENCODE_5280 New
545 SRS280974 SRR384908 modENCODE_5281 New
544 SRS281000 SRR384934 modENCODE_5281 New
541 SRS280998 SRR384932 modENCODE_5282 New
542 SRS280999 SRR384933 modENCODE_5282 New
586 SRS281021 SRR384955 modENCODE_5283 New
587 SRS281022 SRR384956 modENCODE_5283 New
578 SRS280979 SRR384913 modENCODE_5284 New
577 SRS281017 SRR384951 modENCODE_5284 New
574 SRS281015 SRR384949 modENCODE_5285 New
575 SRS281016 SRR384950 modENCODE_5285 New
572 SRS280978 SRR384912 modENCODE_5286 New
571 SRS281014 SRR384948 modENCODE_5286 New
563 SRS281009 SRR384943 modENCODE_5287 New
564 SRS281010 SRR384944 modENCODE_5287 New
567 SRS280977 SRR384911 modENCODE_5288 New
566 SRS281011 SRR384945 modENCODE_5288 New
568 SRS281012 SRR384946 modENCODE_5289 New
569 SRS281013 SRR384947 modENCODE_5289 New
497 SRS280983 SRR384917 modENCODE_5290 New
498 SRS281026 SRR384960 modENCODE_5290 New
547 SRS281001 SRR384935 modENCODE_5291 New
548 SRS281002 SRR384936 modENCODE_5291 New
515 SRS280982 SRR384916 modENCODE_5292 New
516 SRS281027 SRR384961 modENCODE_5292 New
527 SRS280992 SRR384926 modENCODE_5293 New
528 SRS280993 SRR384927 modENCODE_5293 New
584 SRS280980 SRR384914 modENCODE_5295 New
583 SRS281020 SRR384954 modENCODE_5295 New
580 SRS281018 SRR384952 modENCODE_5296 New
581 SRS281019 SRR384953 modENCODE_5296 New
590 SRS280981 SRR384915 modENCODE_5294 New
589 SRS281023 SRR384957 modENCODE_5294 New
BS493 SRR103726 SRR103726 modENCODE_4270 New
BS494 SRR103727 SRR103727 modENCODE_4270 New
BS497 SRR103730 SRR103730 modENCODE_4271 New
BS498 SRR103731 SRR103731 modENCODE_4271 New
BS495 SRR103728 SRR103728 modENCODE_4272 New
BS496 SRR103729 SRR103729 modENCODE_4272 New
BS499 SRR103732 SRR103732 modENCODE_4273 New
BS500 SRR103733 SRR103733 modENCODE_4273 New
BS483 SRR103746 SRR103746 modENCODE_4274 New
BS484 SRR124258 SRR124258 modENCODE_4274 New
BS441 SRR103747 SRR103747 modENCODE_4275 New
BS442 SRR103748 SRR103748 modENCODE_4275 New
BS491 SRR124260 SRR124260 modENCODE_4276 New
BS492 SRR103725 SRR103725 modENCODE_4276 New
BS503 SRR103736 SRR103736 modENCODE_4277 New
BS504 SRR103737 SRR103737 modENCODE_4277 New
BS427 SRR103738 SRR103738 modENCODE_4278 New
BS428 SRR103739 SRR103739 modENCODE_4278 New
BS425 SRR103744 SRR103744 modENCODE_4279 New
BS426 SRR103745 SRR103745 modENCODE_4279 New
BS413 SRR103708 SRR103708 modENCODE_4280 New
BS414 SRR103709 SRR103709 modENCODE_4280 New
BS417 SRR103710 SRR103710 modENCODE_4281 New
BS418 SRR103711 SRR103711 modENCODE_4281 New
BS431 SRR103712 SRR103712 modENCODE_4282 New
BS432 SRR103713 SRR103713 modENCODE_4282 New
BS429 SRR103740 SRR103740 modENCODE_4283 New
BS430 SRR103741 SRR103741 modENCODE_4283 New
BS489 SRR103723 SRR103723 modENCODE_4284 New
BS490 SRR103724 SRR103724 modENCODE_4284 New
BS238 SRR070434 SRR070434 modENCODE_4241 New
BS239 SRR100279 SRR100279 modENCODE_4241 New
BS287 SRR116383 SRR116383 modENCODE_4242 New
BS288 SRR070420 SRR070420 modENCODE_4242 New
BS257 SRR070414 SRR070414 modENCODE_4243 New
BS258 SRR070415 SRR070415 modENCODE_4243 New
BS268 SRR070431 SRR070431 modENCODE_4244 New
BS269 SRR100283 SRR100283 modENCODE_4244 New
BS242 SRR070432 SRR070432 modENCODE_4245 New
BS243 SRR100280 SRR100280 modENCODE_4245 New
BS290 SRR070421 SRR070421 modENCODE_4246 New
BS291 SRR070424 SRR070424 modENCODE_4246 New
BS275 SRR070397 SRR070397 modENCODE_4247 New
BS276 SRR070418 SRR070418 modENCODE_4247 New
BS260 SRR070416 SRR070416 modENCODE_4248 New
BS261 SRR070400 SRR070400 modENCODE_4248 New
BS272 SRR070422 SRR070422 modENCODE_4249 New
BS273 SRR070423 SRR070423 modENCODE_4249 New
BS249 SRR070395 SRR070395 modENCODE_3446,   modENCODE_4250 New
BS250 SRR070399 SRR070399 modENCODE_3446,   modENCODE_4250 New
BS246 SRR070394 SRR070394 modENCODE_3445,   modENCODE_4251 New
BS247 SRR070398 SRR070398 modENCODE_3445,   modENCODE_4251 New
BS296 SRR070391 SRR070391 modENCODE_4252 New
BS297 SRR070404 SRR070404 modENCODE_4252 New
BS293 SRR070403 SRR070403 modENCODE_4253 New
BS294 SRR070390 SRR070390 modENCODE_4253 New
BS281 SRR070387 SRR070387 modENCODE_4254 New
BS282 SRR070402 SRR070402 modENCODE_4254 New
BS278 SRR070401 SRR070401 modENCODE_4255 New
BS279 SRR070386 SRR070386 modENCODE_4255 New
BS487 SRR103721 SRR103721 modENCODE_4285 New
BS488 SRR103722 SRR103722 modENCODE_4285 New
BS455 SRR124259 SRR124259 modENCODE_4286 New
BS456 SRR103718 SRR103718 modENCODE_4286 New
BS323 SRR100271 SRR100271 modENCODE_4256 New
BS324 SRR070412 SRR070412 modENCODE_4256 New
BS465 SRR103719 SRR103719 modENCODE_4287 New
BS466 SRR103720 SRR103720 modENCODE_4287 New
BS501 SRR103734 SRR103734 modENCODE_4288 New
BS502 SRR103735 SRR103735 modENCODE_4288 New
BS314 SRR070409 SRR070409 modENCODE_4257 New
BS315 SRR070410 SRR070410 modENCODE_4257 New
BS311 SRR100269 SRR100269 modENCODE_4258 New
BS312 SRR070426 SRR070426 modENCODE_4258 New
BS308 SRR100268 SRR100268 modENCODE_4259 New
BS309 SRR070408 SRR070408 modENCODE_4259 New
BS300 SRR070405 SRR070405 modENCODE_4260 New
BS301 SRR070406 SRR070406 modENCODE_4260 New
BS303 SRR070392 SRR070392 modENCODE_4261 New
BS304 SRR070393 SRR070393 modENCODE_4261 New
BS305 SRR070425 SRR070425 modENCODE_4262 New
BS306 SRR070407 SRR070407 modENCODE_4262 New
BS234 SRR070436 SRR070436 modENCODE_4263 New
BS235 SRR100281 SRR100281 modENCODE_4263 New
BS284 SRR070388 SRR070388 modENCODE_4264 New
BS285 SRR070419 SRR070419 modENCODE_4264 New
BS252 SRR070430 SRR070430 modENCODE_4265 New
BS253 SRR100282 SRR100282 modENCODE_4265 New
BS264 SRR070396 SRR070396 modENCODE_4266 New
BS265 SRR070417 SRR070417 modENCODE_4266 New
BS320 SRR070411 SRR070411 modENCODE_4268 New
BS321 SRR070428 SRR070428 modENCODE_4268 New
BS317 SRR070427 SRR070427 modENCODE_4269 New
BS318 SRR100270 SRR100270 modENCODE_4269 New
BS326 SRR070429 SRR070429 modENCODE_4267 New
BS327 SRR070413 SRR070413 modENCODE_4267 New
BS433 SRR103742 SRR103742 modENCODE_4289 New
BS434 SRR103743 SRR103743 modENCODE_4289 New
BS435 SRR103714 SRR103714 modENCODE_4290 New
BS436 SRR103715 SRR103715 modENCODE_4290 New
BS153 SRS004689 SRR023595,   SRR023662,   SRR023680,   SRR023702,   SRR023737,   SRR023828,   SRR024220,   SRR035393,   SRR767621 modENCODE_4433 New
BS165 SRS004692 SRR023548,   SRR023598,   SRR023674,   SRR023675,   SRR023681,   SRR023693,   SRR023712,   SRR023757,   SRR029232,   SRR029236 modENCODE_4434 21179090
BS159 SRS004693 SRR023547,   SRR023607,   SRR023645,   SRR023651,   SRR023652,   SRR023717,   SRR023730,   SRR023753,   SRR029230,   SRR029234 modENCODE_4435 21179090
BS150 SRS004695 SRR023543,   SRR023648,   SRR023664,   SRR023678,   SRR023741,   SRR023825,   SRR035394,   SRR767619 modENCODE_4436 New
BS162 SRS004697 SRR023601,   SRR023650,   SRR023698,   SRR023714,   SRR023752,   SRR023823,   SRR024218,   SRR035395 modENCODE_4437 21179090
BS156 SRS004696 SRR023550,   SRR023605,   SRR023606,   SRR023642,   SRR023655,   SRR023658,   SRR023672,   SRR023679,   SRR023709,   SRR023710,   SRR023713,   SRR029176,   SRR029231,   SRR029233,   SRR029235,   SRR767607 modENCODE_4438 New
BS40 SRS004668 SRR023199,   SRR023659,   SRR023663,   SRR023671,   SRR023747,   SRR023755,   SRR024013,   SRR027110,   SRR035417,   SRR035418,   SRR488290,   SRR488297,   SRR767606 ModENCODE_4439 21179090
BS55 SRS004673 SRR023604,   SRR023644,   SRR023694,   SRR023727,   SRR023831,   SRR024010,   SRR024221,   SRR035396,   SRR035397,   SRR767616 ModENCODE_4440 21179090
BS58 SRS004674 SRR023602,   SRR023643,   SRR023703,   SRR023724,   SRR023832,   SRR024012,   SRR035221,   SRR035398,   SRR035399,   SRR070438,   SRR488302,   SRR767613 ModENCODE_4441 21179090
BS62 SRS004675 SRR023540,   SRR023641,   SRR023725,   SRR023734,   SRR023736,   SRR023822,   SRR024011,   SRR035400,   SRR035401,   SRR767618 ModENCODE_4442 21179090
BS66 SRS004676 SRR023600,   SRR023707,   SRR023715,   SRR023720,   SRR023751,   SRR023826,   SRR035402,   SRR488303,   SRR767605 ModENCODE_4443 21179090
BS67 SRS004677 SRR023503,   SRR023599,   SRR023673,   SRR023682,   SRR023686,   SRR023699,   SRR023700,   SRR024215,   SRR027114,   SRR035222,   SRR035403,   SRR767622 ModENCODE_4444 21179090
BS43 SRS004669 SRR023502,   SRR023660,   SRR023705,   SRR023722,   SRR023745,   SRR027112,   SRR488291,   SRR488298,   SRR767626 ModENCODE_4447 21179090
BS71 SRS004678 SRR023506,   SRR023665,   SRR023684,   SRR023718,   SRR023728,   SRR027109,   SRR488304,   SRR767620 ModENCODE_4445 21179090
BS73 SRS004679 SRR023538,   SRR023685,   SRR023711,   SRR023733,   SRR023834,   SRR024015,   SRR035404,   SRR767625 ModENCODE_4446 21179090
BS46 SRS004670 SRR023539,   SRR023669,   SRR023696,   SRR023746,   SRR023836,   SRR024014,   SRR035220,   SRR035405,   SRR035406,   SRR488292,   SRR767609 ModENCODE_4448 21179090
BS49 SRS004671 SRR023504,   SRR023654,   SRR023668,   SRR023688,   SRR023691,   SRR023732,   SRR024009,   SRR024217,   SRR027113,   SRR035407,   SRR035408,   SRR488300,   SRR767610 ModENCODE_4449 21179090
BS54 SRS004672 SRR023549,   SRR023596,   SRR023603,   SRR023657,   SRR023701,   SRR023749,   SRR023750,   SRR023754,   SRR023759,   SRR024219,   SRR035409,   SRR488301,   SRR767615 ModENCODE_4450 21179090
BS107 SRS004680 SRR023597,   SRR023646,   SRR023661,   SRR023666,   SRR023706,   SRR023835,   SRR035410,   SRR488305,   SRR767624 modENCODE_4451 21179090
BS111 SRS004681 SRR023542,   SRR023670,   SRR023719,   SRR023761,   SRR023824,   SRR024016,   SRR035223,   SRR035411,   SRR035412,   SRR488293,   SRR767623 modENCODE_4452 New
BS113 SRS004682 SRR023507,   SRR023649,   SRR023677,   SRR023731,   SRR023760,   SRR027111,   SRR488306,   SRR767627 modENCODE_4453 21179090
BS196 SRS004686 SRR023546,   SRR023608,   SRR023638,   SRR023640,   SRR023697,   SRR023726,   SRR023758,   SRR035413 modENCODE_4454 21179090
BS200 SRS004687 SRR023505,   SRR023676,   SRR023683,   SRR023690,   SRR023692,   SRR023742,   SRR027108,   SRR488294 modENCODE_4455 21179090
BS203 SRS004867 SRR023729,   SRR023739,   SRR023782,   SRR023865,   SRR026433,   SRR035219,   SRR035392 modENCODE_4456 21179090
BS137 SRS004869 SRR023667,   SRR023721,   SRR023743,   SRR023785,   SRR023829,   SRR026431,   SRR488296,   SRR767614 modENCODE_4459 21179090
BS140 SRS004870 SRR023738,   SRR023744,   SRR023748,   SRR023783,   SRR024216,   SRR026430,   SRR035218,   SRR035391,   SRR767611 modENCODE_4460 21179090
BS143 SRS004703 SRR023609,   SRR023653,   SRR023723,   SRR023735,   SRR023740,   SRR023827,   SRR035416,   SRR767612 modENCODE_4461 21179090
BS129 SRS004868 SRR023687,   SRR023695,   SRR023704,   SRR023784,   SRR023837,   SRR026432,   SRR035217,   SRR767617 modENCODE_4462 New
BS133 SRS004701 SRR023544,   SRR023639,   SRR023647,   SRR023689,   SRR023716,   SRR023833,   SRR035414,   SRR488295,   SRR767608 modENCODE_4457 New
BS136 SRS004702 SRR023541,   SRR023656,   SRR023708,   SRR023756,   SRR023830,   SRR035415,   SRR767604 modENCODE_4458 New
BC1 SRX015641 SRR034220 modENCODE_4595,   modENCODE_4607 New
BC6 SRX015642 SRR034221 modENCODE_4603,   modENCODE_4615 New
BC7 SRX015643 SRR034222 modENCODE_4604,   modENCODE_4616 New
BC8 SRX015644 SRR034223 modENCODE_4605,   modENCODE_4617 New
BC9 SRX015645 SRR034224 modENCODE_4606,   modENCODE_4618 New
BC10 SRX015646 SRR034225 modENCODE_4596,   modENCODE_4608 New
BC2 SRX015647 SRR034226 modENCODE_4597,   modENCODE_4609 New
BC11 SRX015648 SRR034227 modENCODE_4598,   modENCODE_4610 New
BC12 SRX015649 SRR034228 modENCODE_4599,   modENCODE_4611 New
BC3 SRX015650 SRR034229 modENCODE_4600,   modENCODE_4612 New
BC4 SRX015651 SRR034230 modENCODE_4601,   modENCODE_4613 New
BC5 SRX015652 SRR034231 modENCODE_4602,   modENCODE_4614 New
BS153 SRX246407 SRR767621
New
BS150 SRX246405 SRR767619
New
BS156 SRX246403 SRR767607
New
BS41 SRX246413 SRR767606
New
BS56 SRX246424 SRR767616
New
BS59 SRX246415 SRR767613
New
BS61 SRX246412 SRR767618
New
BS64 SRX246418 SRR767605
New
BS68 SRX246414 SRR767622
New
BS44 SRX246401 SRR767626
New
BS70 SRX246411 SRR767620
New
BS74 SRX246402 SRR767625
New
BS47 SRX246408 SRR767609
New
BS51 SRX246422 SRR767610
New
BS52 SRX246409 SRR767615
New
BS108 SRX246410 SRR767624
New
BS111 SRX246423 SRR767623
New
BS114 SRX246406 SRR767627
New
BS138 SRX246416 SRR767614
New
BS141 SRX246419 SRR767611
New
BS144 SRX246404 SRR767612
New
BS129 SRX246421 SRR767617
New
BS133 SRX246420 SRR767608
New
BS136 SRX246417 SRR767604
New
BS22 SRS117996 SRR070272 modENCODE_4391 New
BS97 SRP000709 SRR015074,   SRR015076,   SRR015078,   SRR015080,   SRR015082 modENCODE_5955 New
BS208 SRP000709 SRR015084,   SRR015086,   SRR015088,   SRR015090,   SRR015092 modENCODE_5952 New
BS181 SRP000709 SRR015094,   SRR015096,   SRR015098,   SRR015100,   SRR015102 modENCODE_5954 New
BS12 SRP000709 SRR015104,   SRR015106,   SRR015108,   SRR015110,   SRR015112 modENCODE_5953 New
BS205 SRS118004 SRR070260,   SRR070268,   SRR111868 modENCODE_4393 New
BS28 SRS118001 SRR070282,   SRR070288 modENCODE_4392 New
BS76 SRS118000 SRR070264,   SRR070266,   SRR070279,   SRR124149,   SRR767598,   SRR767599,   SRR767600,   SRR767601,   SRR767602,   SRR767603 modENCODE_4409 New
Lai SRS334873 SRR500469 modENCODE_5966 New
BS311 SRS117993 SRR070263,   SRR070265,   SRR070278 modENCODE_4394 New
BS208 SRS117992 SRR070261,   SRR070269,   SRR070292,   SRR111873 modENCODE_4395 New
BS85 SRS118003 SRR070258,   SRR111869,   SRR189833 modENCODE_4396 New
BS176 SRS118006 SRR070275 modENCODE_4397 New
BS209 SRS118008 SRR070262,   SRR070270,   SRR111870 modENCODE_4398 New
BS1 SRS118005 SRR070284,   SRR070290,   SRR111874 modENCODE_4399 New
BS13 SRS117995 SRR070283,   SRR070289 modENCODE_4400 New
BS7 SRS117998 SRR070285,   SRR070291 modENCODE_4401 New
BS16 SRS117999 SRR070267,   SRR111871 modENCODE_4402 New
BS88 SRS118011 SRR070276 modENCODE_4403 New
BS25 SRS118009 SRR070281,   SRR070287,   SRR111875 modENCODE_4404 New
BS183 SRS118010 SRR070273,   SRR111876 modENCODE_4405 New
BS37 SRS118002 SRR070277 modENCODE_4406 New
BS101 SRS118012 SRR070274 modENCODE_4407 New
Lai SRS334874 SRR500468 modENCODE_5965 New
Lai SRS334875 SRR500470 modENCODE_5964 New
Perrimon1 SRX246396,   SRX246397,   SRX246400 SRR767602,   SRR767600,   SRR767603
New
Perrimon2 SRX246395,   SRX246398,   SRX246399 SRR767601,   SRR767599,   SRR767598
New
BS80 SRS117997 SRR070280,   SRR070286,   SRR111877 modENCODE_4408 New
BS170 SRS117994 SRR070259,   SRR111872,   SRR189834,   SRR189835 modENCODE_4410 New
BS34 SRS118007 SRR070271 modENCODE_4411 New


Worm Data for the Comparative ENCODE RNA resource


Biological ID

SRA Sample Accession

New Data or Published (PMID)
N2_EE_50-0 SRS258165 New
N2_EE_50-30 SRS258085 New
N2_EE_50-60 SRS242229 New
N2_EE_50-90 SRS258166 New
N2_EE_50-120 SRS242382 New
N2_EE_50-150 SRS266274 New
N2_EE_50-180 SRS266269 New
N2_EE_50-210 SRS266275 New
N2_EE_50-240 SRS266270 New
N2_EE_50-300 SRS266880 New
N2_EE_50-330 SRS266265 New
N2_EE_50-360 SRS266266 New
N2_EE_50-390 SRS266267 New
N2_EE_50-420 SRS266268 New
N2_EE_50-450 SRS266277 New
N2_EE_50-480 SRS266271 New
N2_EE_50-510 SRS266278 New
N2_EE_50-540 SRS266272 New
N2_EE_50-570 SRS266261 New
N2_EE_50-600 SRS266262 New
N2_EE_50-630 SRS266263 New
N2_EE_50-660 SRS266264 New
N2_EE_50-690 SRS266273 New
N2_EE_50-720 SRS266279 New
EE SRS003001,   SRS003002 21177976
N2_EE-2 SRS151140 New
EE_N2_EE-2 SRS003001,   SRS003002,   SRS151140 New
N2_E2-E8_sorted SRS311762 New
LE SRS003003,   SRS003004 21177976
N2_LE-1 SRS174136 New
LE_N2_LE-1 SRS003003,   SRS174136 New
EmMalesHIM8 SRS004858 21177976
EmMalesHIM8-2 SRS151143 New
EmMalesHIM8_EmMalesHIM8-2 SRS004858,   SRS151143 New
L1 SRS003005 21177976
N2_L1-1 SRS151153 New
L1_N2_L1-1 SRS003005,   SRS151153 New
LIN35 SRS002999 21177976
L2 SRS001788 19181841
N2_L2-4 SRS174229 New
L2_N2_L2-4 SRS001788,   SRS174229 New
L3 SRS001790 19181841
N2_L3-1 SRS150938 New
L3_N2_L3-1 SRS001790,   SRS150938 New
DauerDAF2 SRS004859 21177976
DauerDAF2-2 SRS269390 New
DauerDAF2-2-1 SRS269389 New
DauerDAF2-5-1 SRS269391 New
DauerDAF2_DauerDAF2-2_DauerDAF2-2-1_DauerDAF2-5-1 SRS004859,   SRS269390,   SRS269389,   SRS269391
DauerEntryDAF2 SRS004860 21177976
DauerEntryDAF2-1-1 SRS269109 New
DauerEntryDAF2-2 SRS174141 New
DauerEntryDAF2-4-1 SRS269110 New
DauerEntryDAF2_DauerEntryDAF2-2_DauerEntryDAF2-1-1_DauerEntryDAF2-4-1 SRS004860,   SRS269109,   SRS174141,   SRS269110
DauerExitDAF2 SRS004861 21177976
DauerExitDAF2-2 SRS151144 New
DauerExitDAF2-3-1 SRS269108 New
DauerExitDAF2-6-1 SRS269111 New
DauerExitDAF2-2_DauerExitDAF2-3-1_DauerExitDAF2-6-1 SRS004861,   SRS151144,   SRS269108,   SRS269111
L4 SRS001791 19181841
L4b SRS004864 New
L4_L4b SRS001791,   SRS004864
L4MALE SRS003000 21177976
L4MALE5 SRS174140 New
L4MALE_L4MALE5 SRS003000,   SRS174140
L4JK1107soma SRS008269 21177976
L4JK1107soma-2 SRS151145 New
L4JK1107soma_L4JK1107soma-2 SRS008269,   SRS151145
YA SRS001789 19181841
N2_Yad-1 SRS178501 New
YA_N2_Yad-1 SRS001789,   SRS178501
AdultSPE9 SRS004857 21177976
N2_EE_DSN-51 SRS311763 New
N2_EE_RZ-54 SRS311907 New
N2_L2_RZ-53 SRS311908 New
N2_L2_DSN-50 SRS344178 New
N2_YA_RZ-1 SRS269392 New
DC-1-5 SRS150939 New
DC-2-12 SRS150472 New
OPDC-2-12 SRS150966 New
EF-1-24 SRS150967 New
PL-2-24 SRS150968 New
Harpo SRS008265 21177976
HarpoEcoliCntl SRS008266 21177976
Hsph SRS266743 New
HsphEcoliCntl SRS266741 New
SmacDb10 SRS008267 21177976
SmacDb10EcoliCntl SRS008268 21177976
DSN-Negative-Positive SRS242383,   SRS242384 New
N2_4cell_EE_RZ-56 SRS311761 New
PharyngealMuscle SRS242498 New
N2_Ad_gonad-1-RZLI SRS344182 New
534_DMM_386/DMM386-NSML_NSMR-nrn_L1 SRS308486 New
DMM387-NSML_NSMR-nrn_L1-V SRS311748 New
DMM383-all-nrn_L1-V SRS311746 New
DMM391-all-nrn_L1-V SRS311749 New
DMM383_391-all-nrn_L1-V SRS311746,   SRS311749 New
DMM401-N2all_L1-V SRS311747 New
DMM402-N2all_L1-V SRS311750 New
DMM401_402-N2all_L1-V SRS311747,   SRS311750 New
DMM401_N2all_L1-DSN SRS311684 New
DMM402_N2all_L1-DSN SRS311687 New
DMM408_Amot_nrn_L2-DSN SRS311688 New
DMM414_Amot_nrn_L2-DSN SRS311689 New
DMM415_Amot_nrn_L2-DSN SRS311690 New
DMM408_414_415_Amot_nrn_L2-DSN SRS311688,   SRS311689,   SRS311690 New
DMM239_Z1Z4_Em SRS344160 New
DMM260_N2ref_EE SRS344159 New
DMM389_NSM_L1 SRS344181 New
N2_L4cap4 SRS178993 New
N2_L4RRcap3 SRS178994 New
N2_LE-2cap6 SRS178995 New
L1LIN35-1cap1 SRS179275 New
L4MALE6cap2 SRS179276 New
N2_Yad-1RR SRS269393 New
N2_EE-2cap5 SRS151142 New
PB2801_EE-1 SRS266838 New
PB2801_L4-1 SRS266839 New
PB2801_YAF-1 SRS266840 New
PB2801_YAM-1 SRS266841 New
AF16_EE-2 SRS255459 New
AF16_EE-3 SRS266343 New
AF16_L2-1 SRS183249 New
AF16_L2-2 SRS266344 New
AF16_L4-1 SRS183251 New
AF16_L4-2 SRS266345 New
AF16_YA-1 SRS255509 New
AF16_YA-2 SRS266342 New
AF16_Mx-1 SRS183310 New
DF5081_EE-1 SRS266350 New
DF5081_L2-1 SRS266346 New
DF5081_L4-1 SRS266347 New
DF5081_AD-F-1 SRS266349 New
DF5081_AD-M-1 SRS266348 New
SB146_EE-2 SRS267689 New
SB146_L2-1 SRS183252 New
SB146_L2-5 SRS267690 New
SB146_L4-1 SRS183253 New
SB146_YAF-1 SRS267691 New
SB146_YAM-1 SRS267692 New

Human Data for the Comparative ENCODE RNA resource

GEO Sample Accession Library ID
New Data or Published (PMID)
GSM767854
LID9005
22955616
GSM767854
LID9006
22955616
GSM758564
LID8963
22955616
GSM758564
LID8964
22955616
GSM981246
LID45897
22955616
GSM981246
LID45898
22955616
GSM981247
LID45899
22955616
GSM981247
LID45900
22955616
GSM765396
LID9001
22955616
GSM765396
LID9002
22955616
GSM758561
LID8965
22955616
GSM758561
LID8966
22955616
GSM767855
LID9007
22955616
GSM767855
LID9008
22955616
GSM758562
LID8969
22955616
GSM758562
LID8970
22955616
GSM981254
LID44659
New
GSM981254
LID44660
New
GSM981256
LID44498
New
GSM981256
LID44499
New
GSM981257
LID45901
New
GSM758572
LID8661
22955616
GSM758572
LID8662
22955616
GSM758559
LID16629
22955616
GSM758559
LID16630
22955616
GSM767852
LID18547
22955616
GSM767852
LID18548
22955616
GSM758560
LID8467
22955616
GSM758560
LID8468
22955616
GSM767853
LID9197
22955616
GSM767853
LID9198
22955616
GSM765386
LID8532
22955616
GSM765386
LID8533
22955616
GSM758573
LID8663
22955616
GSM758573
LID8664
22955616
GSM758566
LID8461
22955616
GSM758566
LID8462
22955616
GSM767842
LID18549
22955616
GSM758570
LID8536
22955616
GSM767841
LID9199
22955616
GSM758574
LID8558
22955616
GSM984614
LID47020
New
GSM984614
LID47021
New
GSM984618
LID47022
New
GSM984618
LID47023
New
GSM984611
LID47024
New
GSM984611
LID47025
New
GSM767847
LID8790
22955616
GSM767847
LID8791
22955616
GSM765402
LID16633
22955616
GSM765402
LID16634
22955616
GSM765404
LID8470
22955616
GSM765404
LID8469
22955616
GSM767838
LID18551
22955616
GSM767848
LID9200
22955616
GSM767848
LID9201
22955616
GSM765403
LID8559
22955616
GSM765403
LID8560
22955616
GSM758567
LID8792
22955616
GSM758567
LID8793
22955616
GSM758575
LID16635
22955616
GSM758575
LID16636
22955616
GSM767840
LID18552
22955616
GSM767840
LID18553
22955616
GSM758576
LID8471
22955616
GSM758576
LID8472
22955616
GSM767850
LID9202
22955616
GSM767850
LID9203
22955616
GSM758568
LID8534
22955616
GSM758568
LID8535
22955616
GSM981258
LID47094
New
GSM981258
LID47095
New
GSM765397
LID8831
New
GSM758571
LID8695
New
GSM984621
LID47096
22955616
GSM984606
LID47807
New
GSM981260
LID47097
New
GSM981260
LID47098
New
GSM984608
LID47099
New
GSM984608
LID47100
New
GSM984607
LID47299
New
GSM984607
LID47300
New
GSM984610
LID47251
New
GSM984610
LID47252
New
GSM765393
LID9188
New
GSM767843
LID18554
New
GSM984604
LID47105
New
GSM984604
LID47253
New
GSM984613
LID47260
New
GSM984613
LID47261
New
GSM765391
LID8826
22955616
GSM765391
LID8827
22955616
GSM758578
LID8710
22955616
GSM758578
LID8711
22955616
GSM767856
LID8788
22955616
GSM767856
LID8789
22955616
GSM758563
LID8463
22955616
GSM758563
LID8464
22955616
GSM767839
LID18556
22955616
GSM758569
LID8688
22955616
GSM758569
LID8689
22955616
GSM767857
LID9206
22955616
GSM767857
LID9207
22955616
GSM758565
LID8690
22955616
GSM758565
LID8691
22955616
GSM984619
LID47249
New
GSM984619
LID47250
New
GSM984620
LID47254
New
GSM984620
LID47255
New
GSM981249
LID45016
New
GSM981249
LID45017
New
GSM981243
LID45238
New
GSM981243
LID45239
New
GSM981244
LID45611
New
GSM981244
LID45612
New
GSM981248
LID45613
New
GSM981248
LID45635
New
GSM758577
LID8659
22955616
GSM758577
LID8660
22955616
GSM765405
LID16627
22955616
GSM765405
LID16628
22955616
GSM767849
LID18545
22955616
GSM767849
LID18546
22955616
GSM840137
LID8465
22955616
GSM840137
LID8466
22955616
GSM767844
LID9195
22955616
GSM767844
LID9196
22955616
GSM765387
LID8556
22955616
GSM765387
LID8557
22955616
GSM767851
LID8824
22955616
GSM767851
LID8825
22955616
GSM765388
LID8686
22955616
GSM765388
LID8687
22955616
GSM981252
LID46857
22955616
GSM981252
LID46858
22955616
GSM981245
LID46859
22955616
GSM981245
LID46860
22955616
GSM981259
LID44657
New
GSM981259
LID44658
New
GSM984609
LID44594
New
GSM984609
LID44497
New
GSM984612
LID47247
New
GSM984612
LID47248
New
GSM765398
LID8665
22955616
GSM765398
LID8666
22955616
GSM765398
LID8830
22955616
GSM765401
LID16631
22955616
GSM765401
LID16632
22955616
GSM765401
LID8694
22955616
GSM767843
LID18554
22955616
GSM765400
LID8795
22955616
GSM765400
LID8796
22955616
GSM767857
LID9206
22955616
GSM767857
LID9207
22955616
GSM758565
LID8690
22955616
GSM758565
LID8691
22955616
GSM984616
LID47256
New
GSM984616
LID47257
New
GSM984617
LID47258
New
GSM984617
LID47259
New
GSM765389
LID8828
22955616
GSM765389
LID8829
22955616
GSM765394
LID8692
22955616
GSM765394
LID8701
22955616
GSM984615
LID47245
New
GSM984615
LID47246
New
GSM981253
LID46598
New
GSM981253
LID46599
New
GSM981251
LID46594
New
GSM981251
LID46595
New
GSM981250
LID46596
New
GSM981250
LID46597
New
GSM767845
LID9003
22955616
GSM767845
LID9011
22955616
GSM765395
LID8967
22955616
GSM765395
LID8968
22955616
GSM958728
10515
22955616
GSM958728
10565
22955616
GSM958742
10516
22955616
GSM958747
2971
22955616
GSM958747
11038
22955616
GSM958748
11039
22955616
GSM958748
2970
22955616
GSM958748
2973
22955616
GSM958733
10874
22955616
GSM958733
11289
22955616
GSM958733
11288
22955616
GSM958733
11286
22955616
GSM958743
10876
22955616
GSM958735
10882
22955616
GSM958735
10881
22955616
GSM958732
10879
22955616
GSM958732
10878
22955616
GSM958744
11585
22955616
GSM958744
11584
22955616
GSM958734
10885
22955616
GSM958734
10883
22955616
GSM958729
10517
22955616
GSM958729
10567
22955616
GSM958745
11581
22955616
GSM958745
11582
22955616
GSM958736
10884
22955616
GSM958736
11586
22955616
GSM958746
11588
22955616
GSM958746
11587
22955616


Further details at the modencode.org and encodeproject.org .Go to DCC page for an alternate view of the data. Finally see, the RNA Dashboard for an alternative view of the human data.