Greenbaum et al
25
Senes, A., M. Gerstein, et al. (2000). Statistical analysis of amino acid patterns in transmembrane
helices: the GxxxG motif occurs frequently and in association with beta-branched residues
at neighboring positions. J Mol Biol 296(3): 921-36.
Shapiro, L. and T. Harris (2000). Finding function through structural genomics. Current Opinions
in Biotechnology 11(1): 31-35.
Sharp, P. M. and W. H. Li (1987). The codon Adaptation Index--a measure of directional
synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15(3):
1281-95.
Sherlock, G. (2000). Analysis of large-scale gene expression data. Curr Opin Immunol 12(2): 201-
5.
Shevchenko, A., O. N. Jensen, et al. (1996). Linking genome and proteome by mass spectrometry:
large-scale identification of yeast proteins from two dimensional gels. Proc Natl Acad Sci U
S A 93(25): 14440-5.
Smith, R. D. (2000). Probing proteomes-seeing the whole picture? [In Process Citation]. Nat
Biotechnol 18(10): 1041-2.
Tatusov, R. L., E. V. Koonin, et al. (1997). A genomic perspective on protein families. Science
278(5338): 631-7.
Tekaia, F., A. Lazcano, et al. (1999). The genomic tree as revealed from whole proteome
comparisons. Genome Res 9(6): 550-7.
Vilela, C., B. Linz, et al. (1998). The yeast transcription factor genes YAP1 and YAP2 are subject
to differential control at the levels of both translation and mRNA stability. Nucleic Acids
Res 26(5): 1150-9.
Vilela, C., C. V. Ramirez, et al. (1999). Post-termination ribosome interactions with the 5'UTR
modulate yeast mRNA stability. Embo J 18(11): 3139-52.
Wallin, E. and G. von Heijne (1998). Genome-wide analysis of integral membrane proteins from
eubacterial, archaean, and eukaryotic organisms. Protein Sci 7(4): 1029-38.
Washburn, M. P., D. Wolters, et al. (2001). Large-scale analysis of the yeast proteome by
multidimensional protein identification technology. Nat Biotechnol 19(3): 242-7.
Washburn, M. P. and J. R. Yates, 3rd (2000). Analysis of the microbial proteome. Curr Opin
Microbiol 3(3): 292-7.
Winzeler, E. A., D. D. Shoemaker, et al. (1999). Functional characterization of the S. cerevisiae
genome by gene deletion and parallel analysis. Science 285(5429): 901-6.
Wittes, J. and H. P. Friedman (1999). Searching for evidence of altered gene expression: a
comment on statistical analysis of microarray data [editorial; comment]. J Natl Cancer Inst
91(5): 400-1.
Wolf, Y. I., S. E. Brenner, et al. (1999). Distribution of protein folds in the three superkingdoms of
life. Genome Res 9(1): 17-26.
Young, K. H. (1998). Yeast two-hybrid: so many interactions, (in) so little time... Biol Reprod
58(2): 302-311.
Zhang, M. Q. (1999). Large-scale gene expression data analysis: a new challenge to computational
biologists [published erratum appears in Genome Res 1999 Nov;9(11):1156]. Genome Res
9(8): 681-8.
Zhu, H., J. F. Klemic, et al. (2000). Analysis of yeast protein kinases using protein chips. Nat Genet
26(3): 283-9.
Zuker, M. (2000). Calculating nucleic acid secondary structure. Curr Opin Struct Biol 10(3): 303-
10.