clustering_result_column.txt,20100317,Chong,Nets,Exhibit slides for Kline Science Library Gersteinlab_Kline.pdf,20100317,CS,,Exhibit slides for Kline Science Library Gersteinlab_Kline.pdf,20100317,CS,,Exhibit slides for Kline Science Library allele031710.pdf,20100317,,, Evolving-Definition-of-a-Gene--by-Karen-Hopkin--Bioscience-Dec09--Quotes-MG--bio.2009.59.11.pdf,20100327,MG,,Article on What is a Gene? People-in-GersteinLab-at-end-of-2009.xls,20100327,MG,AboutLab,People-in-GersteinLab-at-end-of-2009.xls EDITFORWEB--Update-for-Annual-Mtg--NIH-CEGS-2008-2009-informatics-progress-report.doc,20100416,mg,AboutLab,CEGS '08-'09 Informatics Progress Report encode2-pgenes-progress-report-for-yr3-20Apr10-web-ver.doc,20100420,YHL,Annotation,Encode2 pseudogenes progress report for year 3 M-Gerstein-CV-26Apr10,20100426,MG,gen-lab-docs,M Gerstein Full CV as of 26 Apr. NB_sin_motion.ppt,20100427,NB,Nets, Analysis-of-Journals-and-Websites-from-PapersPage-9May2010.xls,20100509,MG,AboutLab,Analysis-of-Journals-and-Websites-from-PapersPage-9May2010 ACT_option.png,20100515,,, nih-CEGS-progress-report-2010Q1Q2-informatics-22May10mg.doc,20100522,MG,CEGS,Progress Report EXCERPTS-FROM--nih-CEGS-progress-report-14apr10mg.htm,20100522,MG,CEGS,EXCERPTS-FROM--nih-CEGS-progress-report-14apr10mg research-report-2009-v2-mg30May.htm,20100531,MG,Lab,research-report-2009-v2-mg30May jdu_phd_thesis.pdf,20100531,Jiang,,Jiang Du's PhD Thesis jdu_phd_defense.pdf,20100531,Jiang,,Jiang Du's PhD Thesis Defense Presentation Policy-on-Minors-in-Labs.pdf,20100602,MF,ALL,Yale Policy on MInors top500-0610.tiff,20100617,MF,Staff,No directory listing top500-0610.tiff,20100617,MF,Staff,No directory listing metamembrane-cover-art.ai,20100624,mbg,meta,Illustrator File of Cover Art for Genome Research article on "metamembrane" Gerstein5fltnd.pdf,20101202,mbg,tech,modencode wormawg proof fig 5 Gerstein6new.pdf,20101202,mbg,tech,5modencode wormawg proof fig 6 Noonan_NextGen_2011_final.pptx,20110111,PA,,Slides class 2 people-and-space-as-of-20101231--EXTRACT-FROM--ann-rep-2010.doc,20110114,mbg,,People in the Lab & Room Space as of 31-Dec-2010 Large-scale-collaborations-GersteinLab-involved-with.doc,20110116,mbg,ALL,writeup on large collaborations involving the Gerstein Lab Proteins_I_Rinehart.pdf,20110125,PA,752,Rinehart's Lectures Proteins_II_Rinehart.pdf,20110128,PA,752, NextGen2_apps.ppt,20110201,PA,752,Noonan 2 Lecture_Jia.ppt,20110216,PA,752,Lecture Jia Lecture_PA.ppt,20110216,PA,752,Lecture PA Kei.ppt,20110221,PA,752,Kei Lecture 1KGpapers.pdf,20110314,CSDS,,1KG papers summary Kleinstein.CBB752.2011.pdf,20110315,PA,752,Kleinstein Lectures 1KGpapers-paragraphs.docx,20110315,CSDS,,Summary of 1KG papers ModENCODE_net_comp.pdf,20110325,CS,modENCODE, ModENCODE_net_comp.ppt,20110325,CS,modENCODE, train.txt,20110328,PA,752, rama.pdf,20110402,PA,752,Corey1 rama.pdf,20110402,PA,752,Corey1 protein_folding_1.ppt,20110402,PA,752,CoreyL1 protein_folding_2.ppt,20110402,PA,752,CoreyL1 protein_folding_3.ppt,20110406,PA,752,Corey3 markov_models_1.ppt,20110406,PA,752,Corey4 markov_models_2.ppt,20110406,PA,752,Corey5 markov_models_3.ppt,20110406,PA,752,Corey6 protein_aggregation_1.ppt,20110406,PA,752,Corey7 protein_aggregation_2.ppt,20110406,PA,752,Corey8 test.txt,20110410,PA,752,test set dihedral.dat,20110411,PA,752,hw3_dihedral hw1_positions.dat,20110411,PA,752,hw3_positions hw1_CPSC752.pdf,20110411,PA,752,hw3 sample,20110411,PA,752,sample perl file MBB452_finalproject.doc,20110411,PA,752,Final non-cbb Mark_Posterv2.ppt,20110507,PA,Poster, Mark_Posterv2.ppt,20110507,PA,PA, research-report-2010-v2.doc,20110512,SB,Public,Research Summary 2010 research-report-2010-v2.doc,20110516,SB,,Research Summary 2010 mod,20110629,DZC,GenomeTech,Generates numbers congruent to 1 mod 6 Next_Gen_Seq_Tech_2012.pptx,20120124,,, Next_Gen_Seq_Tech_2012.pptx,20120125,,, Noonan_NextGen2_apps.ppt,20120128,,, JL_Seq.ppt,20120205,,, JL_Seq.pdf,20120205,,, Proteins I_and _II_Rinehart.pdf,20120213,LL,,Prof. Reinhart's lecture slides for CBB 752 Spring 2012 Proteins_I_and _II_Rinehart.pdf,20120213,LL,,Prof. Reinhart's lecture slides for CBB 752 Spring 2012 Proteins_I_and_II_Rinehart.pdf,20120213,LL,,Prof. Reinhart's lecture slides for CBB 752 Spring 2012 Proteins_II_and_Crystallography_2012_Rinehart.pdf,20120215,LL,,Prof. Reinhart's second set of lecture slides for CBB 752 Spring 2012 lecture5to9.pdf,20120220,,, lecture_survey_1to4_response_summary.pdf,20120220,,, mbb_752_2_27_12.ppt,20120227,LL,,Semantic Web for Life Science Data Sharing and Integration Summary_of_Gersteinlab_Genomics_contributions_upto_2012.doc,20120312,DW,,Summary_of_Gersteinlab_Genomics_contributions_upto_2012 Summary_of_Gersteinlab_Genomics_contributions_upto_2012.doc,20120313,DW,,Summary_of_Gersteinlab_Genomics_contributions_upto_2012 Kleinstein.CBB752.02.29.2012.pdf,20120320,LL,,Modeling and Simulation (Computational Immunology) protein_folding_2.ppt,20120321,,, protein_folding_1.ppt,20120321,,, Kleinstein.CBB752.03.21.2012_1.pdf,20120322,LL,,Modeling and Simulation (Computational Immunology) Part 2 Kleinstein.CBB752.03.21.2012_2.pdf,20120322,LL,,Modeling and Simulation (Computational Immunology) Part 3 cbb752_ll_advanced_networks_lecture.pdf,20120328,LL,,Advanced Networks Lecture for CBB 752 (by LL) cbb752_network_test_cases.zip,20120331,LL,,Test cases for the computational networks project for CBB 752 2012 cbb752_hw2_2012.pdf,20120402,,, positions.dat,20120403,,, dihedral.dat,20120403,,, protein_folding_3.ppt,20120411,,, markov_models_1.ppt,20120411,,, markov_models_2.ppt,20120418,,, keck-2012-progress-report.doc,20120909,SB,,Keck 2012 progress report mged-Research_ Report_2011_v3.doc,20120909,SB,,Research summary 2011 mged-Research_Report_2011_v3.doc,20120909,SB,,Research summary 2011 GersteinLabContributions.docx,20131125,ANS,Tech,contributions to genomics upto 2013 rna_seq_doc_131130.pdf,20131202,MRS,,Summary of Gerstein Lab Contributions to RNA-Seq Analysis (11/30/2013) Gerstein_lab_rna_seq_contributions_131202.pdf,20131202,MRS,,Gerstein Lab Contributions to RNA-Seq Analysis up to end of 2013 Gerstein_lab_rna_seq_contributions_120213.pdf,20131202,MRS,,Gerstein Lab Contributions to RNA-Seq Analysis up to end of 2013 Gerstein_lab_annotation_contributions.pdf,20140124,SK,Annotation,Annotation related contributions by Gerstein lab up to end of 2013 Gerstein_lab_annotation_contributions.pdf,20140124,SK,Annotation,Annotation related contributions by Gerstein lab up to end of 2013 Gerstein_lab_annotation_contributions.pdf,20140124,SK,Annotation,Annotation related contributions by Gerstein lab up to end of 2013 Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks .htm,20140224,DW,,dddic Feb 2014 Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks.htm,20140224,DW,,Feb 2014 Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks.htm,20140224,DW,, Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks.htm,20140224,DW,, Gerstein Lab contributions to statistical models of gene expression network analysis and mapping variation onto networks.htm,20140224,DW,, Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks.docx,20140224,DW,, Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks.docx,20140224,DW,, Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks.docx,20140224,DW,, Gerstein_Lab_contributions_to_statistical_models_of_gene expression_network_analysis_and_mapping_variation_onto_networks.htm,20140224,DW,, Gerstein_Lab_contributions_to_statistical_models_of_gene expression_network_analysis_and_mapping_variation_onto_networks.htm,20140224,DW,, Gerstein_Lab_contributions_to_statistical_models_of_gene_expression_network_analysis_and_mapping_variation_onto_networks.htm,20140224,DW,, Gerstein_Lab_contributions_to_statistical_models_of_gene_expression_network_analysis_and_mapping_variation_onto_networks.htm,20140224,DW,, Gerstein_Lab_contributions_to_statistical_models_of_gene_expression_network_analysis_and_mapping_variation_onto_networks.htm,20140224,DW,, Gerstein_Lab_network.htm,20140224,DW,,Gerstein Lab contributions to statistical models of gene expression, network analysis and mapping variation onto networks up to end of 2013 YCC_report_2014.docx,20140306,LL,,Gerstein Lab Cancer Research Accomplishments for Yale Cancer Center Core Grant Binder1_Gerstein.pdf,20140312,KKY,, gerstein-nsf-nrt_grant_v1.docx,20140613,JC,,Yeast description for NSF-NRT grant Regulatory Interactions for 4dnuc Preliminary Results.pdf,20141209,TG,,Regulatory Interactions for 4dnuc Preliminary Results Gerstein_Lab_knowledgebase_design_and_analysis_of_sci_pubs .pdf,20141216,TG,,Gerstein Lab expertise with knowledge-base design and analysis of scientific publications Gerstein_Lab_knowledgebase_design_and_analysis_of_sci_pubs.pdf,20141216,TG,,Gerstein Lab expertise with knowledge-base design and analysis of scientific publications Gerstein_Lab_genome_annotation&variation_networks_comparative genomics.pdf,20141216,TG,,Gerstein Lab contributions to genome annotation and variation, networks, and comparative genomics Gerstein_Lab_genome_annotation&variation_networks_comparative_genomics.pdf,20141216,TG,,Gerstein Lab contributions to genome annotation and variation, networks, and comparative genomics Yale_logo.eps,20150519,JC,.,yale logo vector Gerstein_Lab_ChipSeq_RNASeq_Networks.pdf,20150601,TG,,Lab experience with Chip-Seq, RNA-Seq, and network analysis as of Feb 2015 Gerstein_Lab_analyzing_disease_implications_of_variants.pdf,20150601,TG,, 1000 genomes functional studies.xlsx,20150603,JC,Variation,1000 Genomes functional datasets 1000_genomes_functional_studies.xlsx,20150603,JC,Variation,1000 Genomes functional datasets 1kg_fun_studies.xlsx,20150603,JC,Variation,1KG fun studies 1kg_fun_studies.xlsx,20150603,JC,Variation,1kg fun studies 1kg_fun_studies.htm,20150604,JC,variation,1kg fun studies 1kg_fun_studies.htm,20150604,JC,variation,1kg fun studies 1kg_fun_studies.htm,20150604,JC,variation,1kg fun studies 1kg_fun_studies_revised.htm,20150609,JC,variation,1kg fun studies revised 1kg_fun_studies_revised.htm,20150609,JC,variation,1kg fun studies revised 1kg_fun_studies_revised.htm,20150609,JC,variation,1kg fun studies revised 1kg_fun_studies_revised.htm,20150609,JC,variation,1kg fun studies revised 1kg_fun_studies_revised.htm,20150609,JC,variation,1kg fun studies revised Gerstein_Lab_Structural_Variation_and_Functional_Impact.pdf,20150918,FN,,Gerstein Lab Structural Variation and Functional Impact (gspac) Privacy_Research_Summary_11.2015.docx,20151201,AH,, Privacy_Research_Summary_11.2015.docx,20151201,AH,Tech, RNAseq_processing_pipelines_DS.docx,20151201,DS,(u19asth),Gerstein Lab Experience Creating RNAseq processing pipelines Gerstein_lab_RNASeq_ChipSeq_integrative_analysis_experience.docx,20151201,SL,, RNASeqChipSeqintegrative_analysis.pdf,20151201,SL,, prvWrk_allost.pdf,20151203,DC,summaries,Gerstein Lab Experience in Predicting Allosteric Hotspots IBC.public.pdf,20151203,XL,,IBC_grant_public Gerstein Lab Experience in calling and prioritizing mutation variants.docx,20151209,LS,,Gerstein Lab Experience in calling and prioritizing variants and regions calling_prioritizing.docx,20151209,LS,,Gerstein Lab Experience in calling and prioritizing mutation variants.docx Gerstein Lab Experience in calling and prioritizing variants and regions 4dnbod_2_summary.docx,20151210,MRS,,4dnbod take 2 summary NSF-BBSRC-grantSummaryNov2015toUSE.docx,20151210,CSDS,, Summary_networks_tools.docx,20151210,KKY,, Summary_efforts_big_data.docx,20151210,KKY,, calling_prioritizing.docx,20151210,LS,,Gerstein Lab Experience in calling and prioritizing variants and regions calling-and-prioritizing.docx,20151215,LS,,Gerstein Lab Experience in calling and prioritizing variants and regions gtechR01_summary4wiki.pdf,20160120,SKL,gtechR01,gtechR01 160122_Genomics_I.pdf,20160122,dl598,cbb752b16, 160122_Genomics_Iv2.pdf,20160122,dl598,cbb752b16, sample.bw,20160122,dl598,bigWig, 160125__Genomics_2.pdf,20160125,dl598,cbb752b16, nrg.2015.17.pdf,20160126,dl598,nrgnccan, CBB_752_Proteomics_2016.pdf,20160127,dl598,cbb752b16, CBB_752_Structure_2016.pdf,20160201,dl598,cbb752b16, nmeth.3746.pdf,20160202,dl598,privaseq, Database_KB_Cheung_2_3_16_2.pptx,20160203,dl598,cbb752b16, Temperature.pptx,20160204,CSDS,Temperature426,Summary of Temperatures in Bass426 6-slide-overview-of-the-lab_XL.pdf,20160205,XL,,Lab_Overview CBB 752 DG.pptx,20160208,dl598,cbb752b16, CBB_752_DG.pptx,20160208,dl598,cbb752b16, Personal_Genome_Analyses.doc,20160216,JR,,Personal Genome Analyses SomaticMutationLecture.pdf,20160217,dl598,cbb752b16, DL_Neural_Network_SP2016.pdf,20160229,dl598,cbb752b16, GersteinLab_FiveMainContributions_Mar2016.docx,20160307,MRS,,Gerstein Lab Five Main Contributions 2006_quiz-1.v0.1.doc,20160309,dl598,cbb752a06, 2006_quiz2-rough-with database question.doc,20160309,dl598,cbb752a06, 2006_quiz-2.doc,20160309,dl598,cbb752a06, 2009_CBB752_quiz1.pdf,20160309,dl598,cbb752b09, 2009_CBB752_quiz2.pdf,20160309,dl598,cbb752b09, 2010_CBB752_quiz1.pdf,20160309,dl598,cbb752b10, 2010_CBB752_quiz2.doc,20160309,dl598,cbb752b10, 2010_CBB752_quiz3-4.pdf,20160309,dl598,cbb752b10, 2011_JR_Quiz.docx,20160309,dl598,cbb752b11, Research-summary-nlmtg16-MarkGerstein-11mar16mg.docx,20160311,LL,,Lab research overview for NLM training grant 2016 Functional_Characterization_Summary.docx,20160322,ah,tech,um1fc summary Functional_Characterization_Summary.docx,20160322,AH,tech,um1fc summary 2016_CBB752b_Midterm.pdf,20160323,dl598,cbb752b16, 2016_CBB752b_Midterm_AnswerKey.pdf,20160323,dl598,cbb752b16, MultiOmic_ProcessingPipelines_DataIntegration_DS.docx,20160328,DS,,Gerstein Lab experience in the development of multi-omic processing pipelines and data integration MultiOmic_ProcessingPipelines_DataIntegration_DS.docx,20160328,DS,,Gerstein Lab experience in the development of multi-omic processing pipelines and data integration BrainRelatedRNAseqChipseqAlleleEnhancer_summary.pdf,20160330,SL,,psychsup Kleinstein.CBB752.S2016.Lecture1.pdf,20160406,dl598,cbb752b16, Kleinstein.CBB752.S2016.Lecture2.pdf,20160406,dl598,cbb752b16, Functional_Characterization_Summary.docx,20160406,ah,tech,um1fc summary Functional_Characterization_Summary.docx,20160406,ah,tech,um1fc summary Gersteinlab_RNAseqChipseq_experience_brainrelated2.pdf,20160413,SL,, protein_folding_1.ppt,20160413,dl598,cbb752b16, Functional_Characterization_Summary.docx,20160413,AH,tech,um1fc summary squishy.pdf,20160418,dl598,cbb752b16, squishy.pptx,20160418,dl598,cbb752b16, Kleinstein.CBB752.S2016.Lecture3.pdf,20160418,dl598,cbb752b16, idp.pptx,20160419,dl598,cbb752b16, 4dac_summary.docx,20160420,ANS,TECH,Summary of Previous Gerstein Lab Contributions in the ENCODE DAC grant 4dac_summary.docx,20160420,ANS,TECH,Summary of Gerstein lab contributions in 4dac lecture.pdf,20160420,dl598,cbb752b16, 4dac_summary.docx,20160426,ANS,TECH,Summary of Previous Gerstein Lab Contributions in ENCODE PseudogeneExperience.pdf,20160426,CSDS,Summaries,Gerstein Lab Experience with Pseudogenes 2016_CBB752b_FinalQuiz.pdf,20160429,dl598,cbb752b16, 2016_CBB752b_FinalQuiz.pdf,20160429,dl598,cbb752b16, 2016_CBB752b_FinalQuiz_AnswerKey.pdf,20160429,dl598,cbb752b16, Gerstein_lab_variant_characterization_experience_summary.docx,20160719,AH,tech,g0gwas c03780808.pdf,20160915,,, Key Codes.xlsx,20160915,,, A1.1.pdf,20160915,,, Square_Bass.png,20160915,,, WestCampus.pdf,20160916,,, WestCampus.pdf,20160928,,, PastedGraphic-1.png,20170404,,, HL2nd_Research_Plans_For_Wiki.doc,20170417,JR,,HL2nd grant Gerstein lab experience on ChIP-seq eQTL and integrative analysis.pdf,20170418,SL,,Peccolab Gersteinlab_integrativeanalysis.pdf,20170418,SL,,Peccolab Gerstein_lab_eqtl.pdf,20170503,SL,,Gerstein lab experience in RNA-seq, ChIP-seq, eQTL and integrative analysis CIDC grant text.docx,20170511,Jonathan Warrell,public,CIDC grant text Gerstein Lab Experience in Noncoding Genome Annotation and Variant Prioritization.docx,20170707,HM,, Gerstein_Lab_Experience_in_Noncoding_Genome_Annotation_and_Variant_Prioritization.docx,20170707,HM,,Gerstein Lab Experience in Noncoding Genome Annotation and Variant Prioritization Gerstein_Lab_Experience _in_Variant_Prioritization_with_Focus_on_Cancer.docx,20170709,HM,,Gerstein Lab Experience in Variant Prioritization with Focus on Cancer Gerstein_Lab_Experience _in_Variant_Prioritization_with_Focus_on_Cancer.docx,20170709,HM,,Gerstein Lab Experience in Variant Prioritization with Focus on Cancer GersteinLabVarPrioritizationCancer.docx,20170709,HM,,Gerstein Lab Experience in Variant Prioritization with Focus on Cancer Gerstein_Lab_Experience_Noncoding_Genome_Annotation_and_Variant_Prioritization.docx,20170717,HM,,Gerstein Lab Experience in Noncoding Genome Annotation and Variant Prioritization GersteinLabNoncodingAnnotationAndVariantPrioritization.docx,20170719,HM,,Gerstein Lab Experience in Noncoding Genome Annotation and Variant Prioritization Regulatorynetworks_summary.pdf,20170808,PE,,Gerstein Lab Experience in Constructing Regulatory Networks biomed-datasci-syllabus--cbb752b18.pdf,20180109,,, Present_CBB752_XL.pptx,20180326,,,